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CDS Information : ROP_08940

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close this sectionGenomic map

Display Clone

Rhodococcus opacus B4 chromosome

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Overview 
Genome
Clone

close this sectionLocation

Organism Rhodococcus opacus B4
Replicon chromosome
Start / Stop / Direction 941,061 / 939,493 / -
Location complement(939493..941061)
Type CDS
Length 1,569 bp (522 aa)

close this sectionAnnotation

Product carboxylesterase
Gene name
Functional category Unclassified
- putative function (general)
EC number 3.1.1.1
Note Similar to the cell wall-associated carboxylesterase MT2282 (Rv2224c) of Mycobacterium tuberculosis (P65823).
KEGG pathway
Sequence feature
References Merops:S33
Uniprot:Q54398 Pubmed:7592364
Uniprot:P65823 Pubmed:17428787

close this sectionComputational search results

BLASTP
Database:UniProtKB:14.0
1E=0Q0SHJ1_RHOSRPossible proteinaseAlignment
2E=0Q5YZ86_NOCFAPutative hydrolaseAlignment
3E=1e-150B1MNV1_MYCABPutative uncharacterized proteinAlignment
4E=1e-147B1MNV0_MYCABPutative uncharacterized proteinAlignment
5E=1e-145A4FA56_SACENProbable exported proteaseAlignment
HAMAP No significant hit
InterPro
Database:interpro:18.0
IPR013595 TAP-like protein (Domain)
 [418-522]  3e-28 PF08386
PF08386   Abhydrolase_4
SignalP
 [1-36]  0.612 Signal
Bacteria, Gram-positive   
TMHMM
 [7-29]  Transmembrane (i-o)
Transmembrane 1   
SOSUI
 [6-28]  Transmembrane
Transmembrane 1   

close this sectionCalculated information (Amino acid sequence)

size of protein 522 amino acids
molecular mass 53,989.92 Da
pI 3.97
aa composition
AlaValLeuIlePheTrpProMetGlySer
13.4
(70aa)
9.4
(49aa)
7.1
(37aa)
2.5
(13aa)
2.3
(12aa)
0.6
(3aa)
7.5
(39aa)
1.7
(9aa)
10.9
(57aa)
5
(26aa)
ThrCysAsnGlnTyrLysHisArgAspGlu
7.1
(37aa)
2.3
(12aa)
2.9
(15aa)
3.6
(19aa)
3.1
(16aa)
1.5
(8aa)
0.6
(3aa)
4.8
(25aa)
9.6
(50aa)
4.2
(22aa)

open this sectionSequence

close this sectionCovered clones

NBRC No. clone name start stop length(bp)
G13-001-036 RO1FO01L80015M23 916,147 955,516 39,370

close this sectionDistribution of Our Microbial Genomic DNA clones

We have been distributing copies of the microbial genomic DNA clones constructed during the course of each of the genomic DNA sequencing projects.
You can find more detailed information at http://www.nbrc.nite.go.jp/e/mdna-e.html.