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CDS Information : ROP_12800

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Rhodococcus opacus B4 (= NBRC 108011) chromosome

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Organism Rhodococcus opacus B4 (= NBRC 108011)
Replicon chromosome
Start / Stop / Direction 1,353,690 / 1,354,931 / +
Location 1353690..1354931
Type CDS
Length 1,242 bp (413 aa)

close this sectionAnnotation

Product dihydrolipoamide acyltransferase
Gene name bkdH
Functional category Metabolism
- Carbohydrate Metabolism
EC number 2.3.1.-
Note May be an E2 component of branched-chain alpha-keto acid dehydrogenase (encoded by ROP_12780, ROP_12790).
KEGG pathway map:00280 ec:2.3.1.-
Sequence feature
References Uniprot:Q82F85 Pubmed:7768860
Uniprot:P11961 Pubmed:3421911

close this sectionProteome

Proteome results
strainD (1DE-LC)
strainO+OA (1DE-LC)
Show sequence

close this sectionComputational search results

BLASTP
Database:UniProtKB:14.0
1E=0Q0SGE5_RHOSRDihydrolipoyllysine-residue succinyltransferaseAlignment
2E=1e-124Q0SBA5_RHOSRProbable dihydrolipoyllysine-residue acetyltransferaseAlignment
3E=1e-124A1R4X9_ARTATPyruvate dehydrogenase E2
Dihydrolipoamide acetyltransferase
Alignment
4E=1e-123A0JUQ7_ARTS2Catalytic domain of components of various dehydrogenase complexesAlignment
5E=1e-122A9WL28_RENSMDihydrolipoamide acetyltransferase component of pyruvate dehydrogenase complexAlignment
HAMAP No significant hit
InterPro
Database:interpro:18.0
IPR000089 Biotin/lipoyl attachment (Domain)
 [3-76]  3.7e-21 PF00364
PF00364   Biotin_lipoyl
 [3-76]  15.571 PS50968
PS50968   BIOTINYL_LIPOYL
IPR001078 Catalytic domain of components of various dehydrogenase complexes (Domain)
 [180-411]  2.7e-100 PF00198
PF00198   2-oxoacid_dh
 [331-406]  2e-22 PD001115
PD001115   Q9XA62_STRCO_Q9XA62;
IPR004167 E3 binding (Domain)
 [115-165]  1.7e-11 SSF47005
SSF47005   Peripheral subunit-binding domain of 2-oxo acid dehydrogenase complex
 [126-162]  3.7e-13 PF02817
PF02817   E3_binding
 [125-165]  4.9e-05 G3DSA:4.10.320.10
G3DSA:4.10.320.10   no description
IPR011053 Single hybrid motif (Domain)
 [1-98]  9.8e-23 SSF51230
SSF51230   Single hybrid motif
IPR023213 Chloramphenicol acetyltransferase-like domain (Domain)
 [169-411]  1.5e-73 G3DSA:3.30.559.10
G3DSA:3.30.559.10   no description
SignalP No significant hit
TMHMM No significant hit
SOSUI No significant hit

close this sectionCalculated information (Amino acid sequence)

size of protein 413 amino acids
molecular mass 43,684.48 Da
pI 4.78
aa composition
AlaValLeuIlePheTrpProMetGlySer
12.6
(52aa)
11.1
(46aa)
9.4
(39aa)
3.6
(15aa)
1.7
(7aa)
1
(4aa)
7.5
(31aa)
1.2
(5aa)
7.5
(31aa)
7
(29aa)
ThrCysAsnGlnTyrLysHisArgAspGlu
7.7
(32aa)
0.5
(2aa)
2.2
(9aa)
2.2
(9aa)
1
(4aa)
1.7
(7aa)
1.7
(7aa)
7.5
(31aa)
4.4
(18aa)
8.5
(35aa)

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