small fontnormal fontlarge fontmail to

CDS Information : ROP_13440

close allopen/close all

close this sectionGenomic map

Display

Rhodococcus opacus B4 (= NBRC 108011) chromosome

Legend Jump
Overview 
Genome
Proteome 

close this sectionLocation

Organism Rhodococcus opacus B4 (= NBRC 108011)
Replicon chromosome
Start / Stop / Direction 1,420,509 / 1,422,020 / +
Location 1420509..1422020
Type CDS
Length 1,512 bp (503 aa)

close this sectionAnnotation

Product ATP-dependent DNA ligase LigB
Gene name ligB
Functional category Genetic Information Processing
- Replication and Repair
EC number 6.5.1.1
Note
KEGG pathway KO:K01971
Sequence feature
References Uniprot:Q9HHC4 Pubmed:11053387
Uniprot:P95096 Pubmed:14985346

close this sectionComputational search results

BLASTP
Database:UniProtKB:14.0
1E=0Q0SG75_RHOSRDNA ligase
ATP
Alignment
2E=0Q5YNY7_NOCFADNA ligaseAlignment
3E=0A4F870_SACENDNA ligase I, ATP-dependent
Dnl1
Alignment
4E=1e-138A1UDY9_MYCSKDNA ligase I, ATP-dependent Dnl1Alignment
5E=1e-138A3PXE2_MYCSJDNA ligase I, ATP-dependent Dnl1Alignment
HAMAP No significant hit
InterPro
Database:interpro:18.0
IPR000977 ATP-dependent DNA ligase (Family)
 [82-500]  5e-92 PTHR10459
PTHR10459   ATP-DEPENDENT DNA LIGASE FAMILY
 [210-218]  PS00697
PS00697   DNA_LIGASE_A1
 [20-502]  1.4e-55 TIGR00574
TIGR00574   dnl1: DNA ligase I, ATP-dependent (dnl1)
IPR008994 Nucleic acid-binding, OB-fold (Domain)
 [347-442]  0.0026 SSF50249
SSF50249   Nucleic acid-binding proteins
IPR012308 DNA ligase, N-terminal (Domain)
 [3-189]  2e-20 G3DSA:1.10.3260.10
G3DSA:1.10.3260.10   no description
 [1-140]  4.6e-12 PF04675
PF04675   DNA_ligase_A_N
IPR012309 ATP dependent DNA ligase, C-terminal (Domain)
 [394-459]  1.5e-07 PF04679
PF04679   DNA_ligase_A_C
IPR012310 ATP dependent DNA ligase, central (Domain)
 [187-375]  7.6e-56 PF01068
PF01068   DNA_ligase_A_M
 [284-407]  16.771 PS50160
PS50160   DNA_LIGASE_A3
IPR012340 Nucleic acid-binding, OB-fold (Domain)
 [378-501]  2.2e-30 G3DSA:2.40.50.140
G3DSA:2.40.50.140   no description
IPR016059 ATP-dependent DNA ligase, conserved site (Conserved_site)
 [210-218]  PS00697
PS00697   DNA_LIGASE_A1
SignalP No significant hit
TMHMM No significant hit
SOSUI No significant hit

close this sectionCalculated information (Amino acid sequence)

size of protein 503 amino acids
molecular mass 54,564.02 Da
pI 5.68
aa composition
AlaValLeuIlePheTrpProMetGlySer
12.7
(64aa)
8.5
(43aa)
11.9
(60aa)
3
(15aa)
3.2
(16aa)
1.2
(6aa)
5.4
(27aa)
1.4
(7aa)
8.5
(43aa)
5
(25aa)
ThrCysAsnGlnTyrLysHisArgAspGlu
6.4
(32aa)
0.4
(2aa)
0.4
(2aa)
2.2
(11aa)
1.6
(8aa)
2
(10aa)
2.2
(11aa)
9.9
(50aa)
7.8
(39aa)
6.4
(32aa)

open this sectionSequence