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CDS Information : ROP_16210

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close this sectionGenomic map

Display Clone

Rhodococcus opacus B4 chromosome

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Overview 
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Proteome 
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close this sectionLocation

Organism Rhodococcus opacus B4
Replicon chromosome
Start / Stop / Direction 1,725,013 / 1,727,520 / +
Location 1725013..1727520
Type CDS
Length 2,508 bp (835 aa)

close this sectionAnnotation

Product aminopeptidase N
Gene name pepN
Functional category Environmental Information and Cellular Processing
- Others
EC number 3.4.11.2
Note
KEGG pathway map:00480 KO:K01256
Sequence feature
References Merops:M01
Uniprot:Q11010 Pubmed:7909302

close this sectionProteome

Proteome results
strainO (1DE-LC)
strainD (1DE-LC)
Show sequence

close this sectionComputational search results

BLASTP
Database:UniProtKB:14.0
1E=0Q0SFD7_RHOSRMembrane alanyl aminopeptidaseAlignment
2E=0Q3KZ23_COREQPutative aminopeptidaseAlignment
3E=0A0JWT9_ARTS2Aminopeptidase G. Metallo peptidase. MEROPS family M01Alignment
4E=0A1R6L2_ARTATAminopeptidase NAlignment
5E=0B1VX73_STRGGPutative aminopeptidase NAlignment
HAMAP No significant hit
InterPro
Database:interpro:18.0
IPR001930 Peptidase M1, membrane alanine aminopeptidase (Family)
 [101-778]  4.8e-276 PTHR11533
PTHR11533   PROTEASE M1 ZINC METALLOPROTEASE
 [14-388]  4e-59 PF01433
PF01433   Peptidase_M1
IPR006162 Phosphopantetheine attachment site (PTM)
 [61-76]  PS00012
PS00012   PHOSPHOPANTETHEINE
IPR012778 Peptidase M1, aminopeptidase N actinomycete-type (Family)
 [101-778]  4.8e-276 PTHR11533:SF12
PTHR11533:SF12   AMINOPEPTIDASE N
 [5-828]  TIGR02412
TIGR02412   pepN_strep_liv: aminopeptidase N
IPR014782 Peptidase M1, membrane alanine aminopeptidase, N-terminal (Domain)
 [14-388]  4e-59 PF01433
PF01433   Peptidase_M1
SignalP No significant hit
TMHMM No significant hit
SOSUI No significant hit

close this sectionCalculated information (Amino acid sequence)

size of protein 835 amino acids
molecular mass 91,689.26 Da
pI 4.61
aa composition
AlaValLeuIlePheTrpProMetGlySer
14
(117aa)
6.9
(58aa)
9.7
(81aa)
3.1
(26aa)
4.3
(36aa)
2.6
(22aa)
4.3
(36aa)
0.8
(7aa)
7.2
(60aa)
5.6
(47aa)
ThrCysAsnGlnTyrLysHisArgAspGlu
7.7
(64aa)
0.5
(4aa)
2.2
(18aa)
2.8
(23aa)
3.1
(26aa)
1.2
(10aa)
2
(17aa)
8
(67aa)
8.6
(72aa)
5.3
(44aa)

open this sectionSequence

close this sectionCovered clones

NBRC No. clone name start stop length(bp)
G13-001-066 RO1FO01L80012K18 1,697,117 1,735,347 38,231
G13-001-067 RO1FO01L80010P05 1,724,931 1,769,182 44,252

close this sectionDistribution of Our Microbial Genomic DNA clones

We have been distributing copies of the microbial genomic DNA clones constructed during the course of each of the genomic DNA sequencing projects.
You can find more detailed information at http://www.nbrc.nite.go.jp/e/mdna-e.html.