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CDS Information : ROP_16270

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close this sectionGenomic map

Display Clone

Rhodococcus opacus B4 chromosome

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Overview 
Genome
Proteome 
Clone

close this sectionLocation

Organism Rhodococcus opacus B4
Replicon chromosome
Start / Stop / Direction 1,733,252 / 1,732,275 / -
Location complement(1732275..1733252)
Type CDS
Length 978 bp (325 aa)

close this sectionAnnotation

Product hypothetical protein
Gene name
Functional category Unclassified
- hypothetical protein
EC number
Note
KEGG pathway
Sequence feature
References

close this sectionProteome

Proteome results
strainO (1DE-LC)
strainR (1DE-LC)
strainD (1DE-LC)
strainO+OA (1DE-LC)
Show sequence

close this sectionComputational search results

BLASTP
Database:UniProtKB:14.0
1E=1e-167Q0SFC9_RHOSRPossible pirin-like proteinAlignment
2E=1e-118Q9RJG6_STRCOPutative uncharacterized protein SCO0468Alignment
3E=1e-116A3KKG2_STRAMPutative uncharacterized proteinAlignment
4E=1e-116Q70I10_9ACTOPutative uncharacterized proteinAlignment
5E=1e-110B1MHD4_MYCABPutative uncharacterized proteinAlignment
HAMAP No significant hit
InterPro
Database:interpro:18.0
IPR003829 Pirin, N-terminal (Domain)
 [40-139]  1.7e-46 PF02678
PF02678   Pirin
IPR008778 Pirin, C-terminal (Domain)
 [189-301]  4.2e-26 PF05726
PF05726   Pirin_C
IPR011051 Cupin, RmlC-type (Domain)
 [19-314]  1.1e-67 SSF51182
SSF51182   RmlC-like cupins
IPR012093 Pirin (Family)
 [76-325]  4.2e-70 PTHR13903
PTHR13903   PIRIN-RELATED
 [19-294]  1.6e-91 PIRSF006232
PIRSF006232   Pirin
SignalP No significant hit
TMHMM No significant hit
SOSUI No significant hit

close this sectionCalculated information (Amino acid sequence)

size of protein 325 amino acids
molecular mass 35,075.51 Da
pI 5.09
aa composition
AlaValLeuIlePheTrpProMetGlySer
8
(26aa)
8
(26aa)
9.8
(32aa)
3.4
(11aa)
2.5
(8aa)
2.2
(7aa)
8.6
(28aa)
1.8
(6aa)
12.3
(40aa)
5.2
(17aa)
ThrCysAsnGlnTyrLysHisArgAspGlu
6.5
(21aa)
0.6
(2aa)
2.2
(7aa)
3.1
(10aa)
1.5
(5aa)
0.6
(2aa)
2.8
(9aa)
8.3
(27aa)
4.6
(15aa)
8
(26aa)

open this sectionSequence

close this sectionCovered clones

NBRC No. clone name start stop length(bp)
G13-001-066 RO1FO01L80012K18 1,697,117 1,735,347 38,231
G13-001-067 RO1FO01L80010P05 1,724,931 1,769,182 44,252

close this sectionDistribution of Our Microbial Genomic DNA clones

We have been distributing copies of the microbial genomic DNA clones constructed during the course of each of the genomic DNA sequencing projects.
You can find more detailed information at http://www.nbrc.nite.go.jp/e/mdna-e.html.