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CDS Information : ROP_16330

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close this sectionGenomic map

Display Clone

Rhodococcus opacus B4 chromosome

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Overview 
Genome
Proteome 
Clone

close this sectionLocation

Organism Rhodococcus opacus B4
Replicon chromosome
Start / Stop / Direction 1,738,858 / 1,739,637 / +
Location 1738858..1739637
Type CDS
Length 780 bp (259 aa)

close this sectionAnnotation

Product hypothetical protein
Gene name
Functional category Unclassified
- hypothetical protein
EC number
Note
KEGG pathway
Sequence feature
References

close this sectionProteome

Proteome results
strainO (1DE-LC)
strainR (1DE-LC)
strainD (1DE-LC)
Show sequence

close this sectionComputational search results

BLASTP
Database:UniProtKB:14.0
1E=1e-144Q0SFC2_RHOSRPutative uncharacterized proteinAlignment
2E=4e-61Q5YPF1_NOCFAPutative uncharacterized proteinAlignment
3E=3e-59B2HEZ7_MYCMMAcyl-ACP thioesterase, FatAAlignment
4E=1e-58Q5YY81_NOCFAPutative uncharacterized proteinAlignment
5E=3e-57A5U426_MYCTAPutative uncharacterized proteinAlignment
HAMAP No significant hit
InterPro
Database:interpro:18.0
IPR002864 Acyl-ACP thioesterase (Family)
 [14-256]  8.9e-14 PF01643
PF01643   Acyl-ACP_TE
IPR002864 Acyl-ACP thioesterase (Region)
 [14-256]  8.9e-14 PF01643
PF01643   Acyl-ACP_TE
SignalP No significant hit
TMHMM No significant hit
SOSUI No significant hit

close this sectionCalculated information (Amino acid sequence)

size of protein 259 amino acids
molecular mass 29,359.13 Da
pI 5.22
aa composition
AlaValLeuIlePheTrpProMetGlySer
10.4
(27aa)
8.1
(21aa)
10
(26aa)
5.4
(14aa)
2.7
(7aa)
3.9
(10aa)
5.4
(14aa)
1.2
(3aa)
6.2
(16aa)
4.2
(11aa)
ThrCysAsnGlnTyrLysHisArgAspGlu
5
(13aa)
0.4
(1aa)
2.3
(6aa)
1.2
(3aa)
1.2
(3aa)
1.5
(4aa)
3.5
(9aa)
10.8
(28aa)
9.7
(25aa)
6.9
(18aa)

open this sectionSequence

close this sectionCovered clones

NBRC No. clone name start stop length(bp)
G13-001-067 RO1FO01L80010P05 1,724,931 1,769,182 44,252

close this sectionDistribution of Our Microbial Genomic DNA clones

We have been distributing copies of the microbial genomic DNA clones constructed during the course of each of the genomic DNA sequencing projects.
You can find more detailed information at http://www.nbrc.nite.go.jp/e/mdna-e.html.