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CDS Information : ROP_16480

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close this sectionGenomic map

Display Clone

Rhodococcus opacus B4 chromosome

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close this sectionLocation

Organism Rhodococcus opacus B4
Replicon chromosome
Start / Stop / Direction 1,761,555 / 1,760,476 / -
Location complement(1760476..1761555)
Type CDS
Length 1,080 bp (359 aa)

close this sectionAnnotation

Product putative Mce family protein
Gene name mce1B
Functional category Unclassified
- uncharacterized protein
EC number
Note
KEGG pathway
Sequence feature
References Family/Domain:IPR005693

close this sectionProteome

Proteome results
strainR (1DE-LC)
strainD (1DE-LC)
Show sequence

close this sectionComputational search results

BLASTP
Database:UniProtKB:14.0
1E=0Q0SFA5_RHOSRPossible Mce family proteinAlignment
2E=1e-129Q5YPD3_NOCFAPutative Mce family proteinAlignment
3E=5e-98A4FPQ1_SACENPutative Mce family proteinAlignment
4E=3e-85Q7BUF1_AMYMDPutative lipoproteinAlignment
5E=1e-84A4FC84_SACENPossible Mce family proteinAlignment
HAMAP No significant hit
InterPro
Database:interpro:18.0
IPR003399 Mammalian cell entry related (Domain)
 [36-113]  3.7e-21 PF02470
PF02470   MCE
IPR005693 Mammalian cell entry (Family)
 [10-297]  1.3e-60 TIGR00996
TIGR00996   Mtu_fam_mce: virulence factor Mce family pr
SignalP
 [1-26]  0.739 Signal
Bacteria, Gram-positive   
TMHMM
 [12-34]  Transmembrane (i-o)
Transmembrane 1   
SOSUI
 [9-31]  Transmembrane
Transmembrane 1   

close this sectionCalculated information (Amino acid sequence)

size of protein 359 amino acids
molecular mass 38,437.52 Da
pI 4.64
aa composition
AlaValLeuIlePheTrpProMetGlySer
8.4
(30aa)
8.6
(31aa)
11.4
(41aa)
5.6
(20aa)
3.1
(11aa)
0.6
(2aa)
3.6
(13aa)
1.1
(4aa)
8.6
(31aa)
5.6
(20aa)
ThrCysAsnGlnTyrLysHisArgAspGlu
11.1
(40aa)
0.6
(2aa)
5.8
(21aa)
5.8
(21aa)
1.4
(5aa)
3.1
(11aa)
0.3
(1aa)
5
(18aa)
5.3
(19aa)
5
(18aa)

open this sectionSequence

close this sectionCovered clones

NBRC No. clone name start stop length(bp)
G13-001-067 RO1FO01L80010P05 1,724,931 1,769,182 44,252
G13-001-068 RO1FO01L80016P19 1,757,342 1,798,094 40,753

close this sectionDistribution of Our Microbial Genomic DNA clones

We have been distributing copies of the microbial genomic DNA clones constructed during the course of each of the genomic DNA sequencing projects.
You can find more detailed information at http://www.nbrc.nite.go.jp/e/mdna-e.html.