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CDS Information : ROP_16490

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close this sectionGenomic map

Display Clone

Rhodococcus opacus B4 chromosome

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close this sectionLocation

Organism Rhodococcus opacus B4
Replicon chromosome
Start / Stop / Direction 1,762,910 / 1,761,552 / -
Location complement(1761552..1762910)
Type CDS
Length 1,359 bp (452 aa)

close this sectionAnnotation

Product putative Mce family protein
Gene name mce1A
Functional category Unclassified
- uncharacterized protein
EC number
Note
KEGG pathway
Sequence feature
References Family/Domain:IPR005693

close this sectionComputational search results

BLASTP
Database:UniProtKB:14.0
1E=0Q0SFA4_RHOSRPossible Mce family proteinAlignment
2E=0Q0S1U5_RHOSRPossible Mce family proteinAlignment
3E=1e-121Q5YPD2_NOCFAPutative Mce family proteinAlignment
4E=1e-89A4FPQ2_SACENPutative Mce family proteinAlignment
5E=9e-82Q7BUF2_AMYMDPutative secreted proteinAlignment
HAMAP No significant hit
InterPro
Database:interpro:18.0
IPR002086 Aldehyde dehydrogenase (Domain)
 [422-429]  PS00687
PS00687   ALDEHYDE_DEHYDR_GLU
IPR003399 Mammalian cell entry related (Domain)
 [38-117]  3.9e-12 PF02470
PF02470   MCE
IPR005693 Mammalian cell entry (Family)
 [11-301]  2.5e-41 TIGR00996
TIGR00996   Mtu_fam_mce: virulence factor Mce family pr
IPR016160 Aldehyde dehydrogenase, conserved site (Conserved_site)
 [422-429]  PS00687
PS00687   ALDEHYDE_DEHYDR_GLU
SignalP
 [1-28]  0.79 Signal
Bacteria, Gram-positive   
TMHMM
 [13-32]  Transmembrane (i-o)
Transmembrane 1   
SOSUI
 [12-34]  Transmembrane
Transmembrane 1   

close this sectionCalculated information (Amino acid sequence)

size of protein 452 amino acids
molecular mass 47,513.59 Da
pI 4.25
aa composition
AlaValLeuIlePheTrpProMetGlySer
10.6
(48aa)
8
(36aa)
11.3
(51aa)
3.3
(15aa)
3.8
(17aa)
0.2
(1aa)
8.2
(37aa)
1.1
(5aa)
9.7
(44aa)
6.6
(30aa)
ThrCysAsnGlnTyrLysHisArgAspGlu
7.3
(33aa)
0.4
(2aa)
4
(18aa)
4
(18aa)
2.7
(12aa)
2.9
(13aa)
0
(0aa)
4.4
(20aa)
6
(27aa)
5.5
(25aa)

open this sectionSequence

close this sectionCovered clones

NBRC No. clone name start stop length(bp)
G13-001-067 RO1FO01L80010P05 1,724,931 1,769,182 44,252
G13-001-068 RO1FO01L80016P19 1,757,342 1,798,094 40,753

close this sectionDistribution of Our Microbial Genomic DNA clones

We have been distributing copies of the microbial genomic DNA clones constructed during the course of each of the genomic DNA sequencing projects.
You can find more detailed information at http://www.nbrc.nite.go.jp/e/mdna-e.html.