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CDS Information : ROP_16510

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close this sectionGenomic map

Display Clone

Rhodococcus opacus B4 chromosome

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Overview 
Genome
Proteome 
Clone

close this sectionLocation

Organism Rhodococcus opacus B4
Replicon chromosome
Start / Stop / Direction 1,764,566 / 1,763,772 / -
Location complement(1763772..1764566)
Type CDS
Length 795 bp (264 aa)

close this sectionAnnotation

Product putative YrbE family protein
Gene name yrbE1A
Functional category Unclassified
- uncharacterized protein
EC number
Note
KEGG pathway
Sequence feature
References

close this sectionProteome

Proteome results
strainD (1DE-LC)
Show sequence

close this sectionComputational search results

BLASTP
Database:UniProtKB:14.0
1E=1e-140Q0SFA2_RHOSRPossible ABC transport system, permease componentAlignment
2E=1e-115Q5YPD0_NOCFAPutative YrbE family proteinAlignment
3E=1e-103Q9KXZ4_STRCOPutative ABC-transporter integral membrane proteinAlignment
4E=1e-103Q7BUF4_AMYMDPutative ABC-transporter integral membrane proteinAlignment
5E=1e-103A0ACD5_STRAMPutative ABC-transporter integral membrane proteinAlignment
HAMAP No significant hit
InterPro
Database:interpro:18.0
IPR003453 Protein of unknown function DUF140 (Domain)
 [12-256]  4.30000170645879e-86 PF02405
PF02405   DUF140
SignalP No significant hit
TMHMM
 [47-69]  Transmembrane (i-o) [93-115]  Transmembrane (o-i) [150-172]  Transmembrane (i-o) [197-216]  Transmembrane (o-i) [237-259]  Transmembrane (i-o)
Transmembrane 5   
SOSUI
 [49-71]  Transmembrane [90-112]  Transmembrane [149-171]  Transmembrane [200-222]  Transmembrane [237-259]  Transmembrane
Transmembrane 5   

close this sectionCalculated information (Amino acid sequence)

size of protein 264 amino acids
molecular mass 27,477.43 Da
pI 9.82
aa composition
AlaValLeuIlePheTrpProMetGlySer
13.3
(35aa)
13.3
(35aa)
11.4
(30aa)
7.6
(20aa)
6.1
(16aa)
0.8
(2aa)
4.5
(12aa)
1.9
(5aa)
10.6
(28aa)
5.3
(14aa)
ThrCysAsnGlnTyrLysHisArgAspGlu
4.5
(12aa)
0
(0aa)
3.4
(9aa)
4.5
(12aa)
1.5
(4aa)
2.7
(7aa)
0.4
(1aa)
3.4
(9aa)
1.9
(5aa)
3
(8aa)

open this sectionSequence

close this sectionCovered clones

NBRC No. clone name start stop length(bp)
G13-001-067 RO1FO01L80010P05 1,724,931 1,769,182 44,252
G13-001-068 RO1FO01L80016P19 1,757,342 1,798,094 40,753

close this sectionDistribution of Our Microbial Genomic DNA clones

We have been distributing copies of the microbial genomic DNA clones constructed during the course of each of the genomic DNA sequencing projects.
You can find more detailed information at http://www.nbrc.nite.go.jp/e/mdna-e.html.