small fontnormal fontlarge fontmail to

CDS Information : ROP_17420

close allopen/close all

close this sectionGenomic map

Display Clone

Rhodococcus opacus B4 (= NBRC 108011) chromosome

Legend Jump
Overview 
Genome
Proteome 
Clone

close this sectionLocation

Organism Rhodococcus opacus B4 (= NBRC 108011)
Replicon chromosome
Start / Stop / Direction 1,847,768 / 1,847,022 / -
Location complement(1847022..1847768)
Type CDS
Length 747 bp (248 aa)

close this sectionAnnotation

Product 2,3-bisphosphoglycerate-dependent phosphoglycerate mutase
Gene name gpmA
Functional category Metabolism
- Carbohydrate Metabolism
EC number 5.4.2.1
Note
KEGG pathway map:00010 KO:K01834
Sequence feature
References HAMAP:MF_01039

close this sectionProteome

Proteome results
2D-PAGE(Protein Sequencer)
strainO (2D-PAGE)
strainR (2D-PAGE)
strainD (2D-PAGE)
strainO+OA (2D-PAGE)
strainO (1DE-LC)
strainR (1DE-LC)
strainD (1DE-LC)
strainO+OA (1DE-LC)
Show sequence

close this sectionComputational search results

BLASTP
Database:UniProtKB:14.0
1E=1e-139GPMA_RHOSR2,3-bisphosphoglycerate-dependent phosphoglycerate mutase
Phosphoglyceromutase
PGAM
BPG-dependent PGAM
dPGM
Alignment
2E=1e-117GPMA_NOCFA2,3-bisphosphoglycerate-dependent phosphoglycerate mutase
Phosphoglyceromutase
PGAM
BPG-dependent PGAM
dPGM
Alignment
3E=1e-111A4FQ04_SACENPhosphoglycerate mutaseAlignment
4E=1e-109A1UAN0_MYCSKPhosphoglycerate mutaseAlignment
5E=1e-109Q1BEA4_MYCSSPhosphoglycerate mutaseAlignment
HAMAP
Database:HAMAP:20080521
 [4-230]  45.158 MF_01039
MF_01039   GPMA
InterPro
Database:interpro:18.0
IPR001345 Phosphoglycerate/bisphosphoglycerate mutase (Active_site)
 [8-17]  PS00175
PS00175   PG_MUTASE
IPR001345 Phosphoglycerate/bisphosphoglycerate mutase (Family)
 [8-17]  PS00175
PS00175   PG_MUTASE
IPR005952 Phosphoglycerate mutase 1 (Family)
 [4-247]  2.8e-171 TIGR01258
TIGR01258   pgm_1: phosphoglycerate mutase
 [2-248]  2.4e-127 PTHR11931
PTHR11931   PHOSPHOGLYCERATE MUTASE
IPR013078 Phosphoglycerate mutase (Domain)
 [5-189]  1e-42 PF00300
PF00300   PGAM
SignalP No significant hit
TMHMM No significant hit
SOSUI No significant hit

close this sectionCalculated information (Amino acid sequence)

size of protein 248 amino acids
molecular mass 27,442.95 Da
pI 4.88
aa composition
AlaValLeuIlePheTrpProMetGlySer
9.3
(23aa)
5.2
(13aa)
13.7
(34aa)
5.2
(13aa)
0.8
(2aa)
2.4
(6aa)
5.6
(14aa)
0.8
(2aa)
8.1
(20aa)
4
(10aa)
ThrCysAsnGlnTyrLysHisArgAspGlu
6.5
(16aa)
0.4
(1aa)
4.8
(12aa)
2
(5aa)
3.6
(9aa)
4
(10aa)
2.8
(7aa)
6
(15aa)
8.5
(21aa)
6
(15aa)

open this sectionSequence

close this sectionCovered clones

NBRC No. clone name start stop length(bp)
G13-001-070 RO1FO01L80010K04 1,808,921 1,851,023 42,103
G13-001-071 RO1FO01L80004D05 1,825,901 1,869,140 43,240

close this sectionDistribution of Our Microbial Genomic DNA clones

We have been distributing copies of the microbial genomic DNA clones constructed during the course of each of the genomic DNA sequencing projects.
You can find more detailed information at http://www.nbrc.nite.go.jp/e/mdna-e.html.