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CDS Information : ROP_22290

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close this sectionGenomic map

Display Clone

Rhodococcus opacus B4 chromosome

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Overview 
Genome
Proteome 
Clone

close this sectionLocation

Organism Rhodococcus opacus B4
Replicon chromosome
Start / Stop / Direction 2,390,259 / 2,389,015 / -
Location complement(2389015..2390259)
Type CDS
Length 1,245 bp (414 aa)

close this sectionAnnotation

Product putative hydrolase
Gene name
Functional category Unclassified
- putative function (general)
EC number
Note
KEGG pathway
Sequence feature
References Uniprot:P80092 Pubmed:1597179,12885660,7559343
Uniprot:O04373 Pubmed:10072397

close this sectionProteome

Proteome results
strainO+OA (1DE-LC)
Show sequence

close this sectionComputational search results

BLASTP
Database:UniProtKB:14.0
1E=0Q0SDS9_RHOSRAmidohydrolaseAlignment
2E=1e-134A4FD42_SACENPutative metal-dependent amidase/aminoacylase/carboxypeptidaseAlignment
3E=1e-133Q0RGC7_FRAAAPutative metal-dependent amidase/aminoacylase/carboxypeptidaseAlignment
4E=1e-130A1RAI4_ARTATPutative Metal-dependent amidase/aminoacylase/carboxypeptidaseAlignment
5E=1e-129B1PDJ0_9MICCIndole-3-acetyl-alanine hydrolaseAlignment
HAMAP No significant hit
InterPro
Database:interpro:18.0
IPR002933 Peptidase M20 (Family)
 [76-395]  7.5e-38 PF01546
PF01546   Peptidase_M20
IPR010168 Peptidase M20D, amidohydrolase (Family)
 [14-385]  4.8e-80 TIGR01891
TIGR01891   amidohydrolases: amidohydrolase
IPR011650 Peptidase M20, dimerisation (Domain)
 [189-303]  9.8e-29 SSF55031
SSF55031   Bacterial exopeptidase dimerisation domain
 [183-294]  1.3e-10 PF07687
PF07687   M20_dimer
IPR017439 Peptidase M20D, mername-AA028/carboxypeptidase Ss1 (Family)
 [1-401]  1.3e-97 PIRSF005962
PIRSF005962   Metal-dependent amidase/aminoacylase/carboxypeptidase
SignalP No significant hit
TMHMM No significant hit
SOSUI No significant hit

close this sectionCalculated information (Amino acid sequence)

size of protein 414 amino acids
molecular mass 43,904.47 Da
pI 4.75
aa composition
AlaValLeuIlePheTrpProMetGlySer
14.3
(59aa)
9.9
(41aa)
8.9
(37aa)
1.7
(7aa)
2.9
(12aa)
0.2
(1aa)
4.8
(20aa)
3.4
(14aa)
8.9
(37aa)
5.1
(21aa)
ThrCysAsnGlnTyrLysHisArgAspGlu
7
(29aa)
1
(4aa)
1.2
(5aa)
3.6
(15aa)
1.9
(8aa)
1.7
(7aa)
2.4
(10aa)
7.5
(31aa)
8.7
(36aa)
4.8
(20aa)

open this sectionSequence

close this sectionCovered clones

NBRC No. clone name start stop length(bp)
G13-001-091 RO1FO01L80005N14 2,357,410 2,402,351 44,942
G13-001-092 RO1FO01L80004L14 2,388,915 2,430,413 41,499

close this sectionDistribution of Our Microbial Genomic DNA clones

We have been distributing copies of the microbial genomic DNA clones constructed during the course of each of the genomic DNA sequencing projects.
You can find more detailed information at http://www.nbrc.nite.go.jp/e/mdna-e.html.