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CDS Information : ROP_22490

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close this sectionGenomic map

Display Clone

Rhodococcus opacus B4 chromosome

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close this sectionLocation

Organism Rhodococcus opacus B4
Replicon chromosome
Start / Stop / Direction 2,408,592 / 2,408,011 / -
Location complement(2408011..2408592)
Type CDS
Length 582 bp (193 aa)

close this sectionAnnotation

Product putative TetR family transcriptional regulator
Gene name
Functional category Genetic Information Processing
- Transcription
EC number
Note Belongs to the TetR transcriptional regulator family, which includes the Tn10 tetracycline repressor protein TetR of Escherichia coli (P04483), the tetracenomycin C transcriptional repressor TcmR of Streptomyces glaucescens (P39885) and the cytochrome P450BM-3 repressor Bm3R1 of Bacillus megaterium (P43506).
KEGG pathway
Sequence feature
References Family/Domain:tetR_DBD

close this sectionProteome

Proteome results
strainR (1DE-LC)
strainD (1DE-LC)
Show sequence

close this sectionComputational search results

BLASTP
Database:UniProtKB:14.0
1E=2e-99Q0SDQ9_RHOSRTranscriptional regulator, TetR family proteinAlignment
2E=1e-29Q5YTU7_NOCFAPutative transcriptional regulatorAlignment
3E=3e-29Q0S9N1_RHOSRProbable transcriptional regulator, TetR family proteinAlignment
4E=4e-27Q9X7X9_STRCOPutative regulatory proteinAlignment
5E=4e-25Q5YXK5_NOCFAPutative transcriptional regulatorAlignment
HAMAP No significant hit
InterPro
Database:interpro:18.0
IPR001647 Bacterial regulatory protein, TetR (Domain)
 [3-63]  22.646 PS50977
PS50977   HTH_TETR_2
 [9-55]  3.7e-19 PF00440
PF00440   TetR_N
IPR009057 Homeodomain-like (Domain)
 [4-74]  9.3e-18 SSF46689
SSF46689   Homeodomain-like
IPR011075 Tetracycline transcriptional regulator, TetR-related, C-terminal (Domain)
 [77-191]  1.7e-12 SSF48498
SSF48498   Tetracyclin repressor-like, C-terminal domain
IPR012287 Homeodomain-related (Domain)
 [5-55]  1.2e-13 G3DSA:1.10.10.60
G3DSA:1.10.10.60   no description
SignalP No significant hit
TMHMM No significant hit
SOSUI No significant hit

close this sectionCalculated information (Amino acid sequence)

size of protein 193 amino acids
molecular mass 21,031.83 Da
pI 6.79
aa composition
AlaValLeuIlePheTrpProMetGlySer
18.1
(35aa)
9.3
(18aa)
8.3
(16aa)
3.1
(6aa)
3.6
(7aa)
1
(2aa)
3.6
(7aa)
1.6
(3aa)
5.2
(10aa)
3.1
(6aa)
ThrCysAsnGlnTyrLysHisArgAspGlu
6.7
(13aa)
1.6
(3aa)
3.6
(7aa)
3.6
(7aa)
3.6
(7aa)
2.1
(4aa)
3.1
(6aa)
7.8
(15aa)
6.2
(12aa)
4.7
(9aa)

open this sectionSequence

close this sectionCovered clones

NBRC No. clone name start stop length(bp)
G13-001-092 RO1FO01L80004L14 2,388,915 2,430,413 41,499

close this sectionDistribution of Our Microbial Genomic DNA clones

We have been distributing copies of the microbial genomic DNA clones constructed during the course of each of the genomic DNA sequencing projects.
You can find more detailed information at http://www.nbrc.nite.go.jp/e/mdna-e.html.