small fontnormal fontlarge fontmail to

CDS Information : ROP_22660

close allopen/close all

close this sectionGenomic map

Display Clone

Rhodococcus opacus B4 chromosome

Legend Jump
Overview 
Genome
Proteome 
Clone

close this sectionLocation

Organism Rhodococcus opacus B4
Replicon chromosome
Start / Stop / Direction 2,422,501 / 2,423,778 / +
Location 2422501..2423778
Type CDS
Length 1,278 bp (425 aa)

close this sectionAnnotation

Product putative 4-hydroxybenzoate/protocatechuate transporter
Gene name pcaK
Functional category Environmental Information and Cellular Processing
- Membrane Transport (01310)
EC number
Note Similar to the 4-hydroxybenzoate/protocatechuate transporter PcaK (Ncgl1031) of Corynebacterium glutamicum (Q8NRH3).
KEGG pathway
Sequence feature
References Uniprot:Q8NRH3 Pubmed:17322206

close this sectionComputational search results

BLASTP
Database:UniProtKB:14.0
1E=0Q0SDN9_RHOSRAromatic acid transporter, MFS superfamily proteinAlignment
2E=1e-134A4QD40_CORGBPutative uncharacterized proteinAlignment
3E=1e-132Q8NRH3_CORGLPermeases of the major facilitator superfamily
Putative benzoate transport transmembrane protein
Alignment
4E=1e-121A4F7Z0_SACENAromatic acid transporter, MFS superfamilyAlignment
5E=1e-105Q8FQI8_COREFPutative benzoate transport proteinAlignment
HAMAP No significant hit
InterPro
Database:interpro:18.0
IPR007114 Major facilitator superfamily (Family)
 [17-425]  49.107 PS50850
PS50850   MFS
IPR011701 Major facilitator superfamily MFS-1 (Domain)
 [21-395]  2.8e-45 PF07690
PF07690   MFS_1
IPR011701 Major facilitator superfamily MFS_1 (Family)
 [21-395]  2.8e-45 PF07690
PF07690   MFS_1
IPR016196 Major facilitator superfamily, general substrate transporter (Domain)
 [1-425]  9e-78 SSF103473
SSF103473   MFS general substrate transporter
IPR020846 Major facilitator superfamily domain (Domain)
 [17-425]  49.107 PS50850
PS50850   MFS
SignalP
 [1-36]  0.719 Signal
Bacteria, Gram-positive   
TMHMM
 [13-35]  Transmembrane (i-o) [50-72]  Transmembrane (o-i) [85-104]  Transmembrane (i-o) [109-131]  Transmembrane (o-i) [144-166]  Transmembrane (i-o) [171-193]  Transmembrane (o-i) [248-270]  Transmembrane (i-o) [285-307]  Transmembrane (o-i) [314-331]  Transmembrane (i-o) [336-358]  Transmembrane (o-i) [371-393]  Transmembrane (i-o) [398-420]  Transmembrane (o-i)
Transmembrane 12   
SOSUI
 [16-38]  Transmembrane [53-75]  Transmembrane [85-107]  Transmembrane [111-133]  Transmembrane [164-186]  Transmembrane [246-268]  Transmembrane [282-304]  Transmembrane [311-333]  Transmembrane [339-361]  Transmembrane [375-397]  Transmembrane [402-424]  Transmembrane
Transmembrane 11   

close this sectionCalculated information (Amino acid sequence)

size of protein 425 amino acids
molecular mass 44,295.40 Da
pI 9.76
aa composition
AlaValLeuIlePheTrpProMetGlySer
15.5
(66aa)
9.4
(40aa)
15.1
(64aa)
5.6
(24aa)
5.6
(24aa)
2.1
(9aa)
4.5
(19aa)
1.6
(7aa)
11.1
(47aa)
5.9
(25aa)
ThrCysAsnGlnTyrLysHisArgAspGlu
5.9
(25aa)
0.9
(4aa)
2.1
(9aa)
1.2
(5aa)
2.8
(12aa)
1.4
(6aa)
0.9
(4aa)
4.5
(19aa)
1.4
(6aa)
2.4
(10aa)

open this sectionSequence

close this sectionCovered clones

NBRC No. clone name start stop length(bp)
G13-001-092 RO1FO01L80004L14 2,388,915 2,430,413 41,499
G13-001-093 RO1FO01L80010A12 2,418,033 2,454,632 36,600

close this sectionDistribution of Our Microbial Genomic DNA clones

We have been distributing copies of the microbial genomic DNA clones constructed during the course of each of the genomic DNA sequencing projects.
You can find more detailed information at http://www.nbrc.nite.go.jp/e/mdna-e.html.