CDS Information : ROP_22690

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Rhodococcus opacus B4 chromosome	Legend Jump
Overview  Genome Proteome  Clone

Center position		change
ID		change
Gene name		change

Organism	Rhodococcus opacus B4
Replicon	chromosome
Start / Stop / Direction	2,425,381 / 2,424,746 / -
Location	complement(2424746..2425381)
Type	CDS
Length	636 bp (211 aa)

Product	putative ABC transporter ATP-binding protein
Gene name
Functional category	Environmental Information and Cellular Processing - Membrane Transport (01310)
EC number
Note
KEGG pathway
Sequence feature
References	Family/Domain:IPR003439 Uniprot:P42360 Pubmed:7927711

Proteome results	strainO (1DE-LC) strainR (1DE-LC) strainD (1DE-LC) Show sequence

BLASTP Database:UniProtKB:14.0 show BLAST table	1 E=7e-95 Q0SDN6_RHOSR ABC metal ion transporter, ATP-binding component Alignment 2 E=8e-49 Q50E84_STRFL Putative ABC transporter ATP-binding protein Alignment 3 E=7e-48 Q5YXB9_NOCFA Putative ABC transporter ATP-binding protein Alignment 4 E=1e-45 Q9RJF8_STRCO ABC transport protein, ATP-binding subunit Alignment 5 E=1e-43 A4Q9W1_CORGB Putative uncharacterized protein Alignment
HAMAP	No significant hit
InterPro Database:interpro:18.0	IPR003439 ABC transporter related (Domain) PS00211   ABC_TRANSPORTER_1 PD000006   Q9RJF8_STRCO_Q9RJF8; PF00005   ABC_tran PS50893   ABC_TRANSPORTER_2 IPR003593 AAA+ ATPase, core (Domain) SM00382   no description IPR017871 ABC transporter, conserved site (Conserved_site) PS00211   ABC_TRANSPORTER_1
SignalP	No significant hit
TMHMM	No significant hit
SOSUI	No significant hit

size of protein	211 amino acids
molecular mass	21,953.13 Da
pI	10.96
aa composition	Ala Val Leu Ile Phe Trp Pro Met Gly Ser 14.7 (31aa) 11.4 (24aa) 12.8 (27aa) 2.8 (6aa) 0 (0aa) 0.9 (2aa) 2.8 (6aa) 0.9 (2aa) 11.8 (25aa) 4.7 (10aa) Thr Cys Asn Gln Tyr Lys His Arg Asp Glu 7.1 (15aa) 0.9 (2aa) 1.4 (3aa) 4.3 (9aa) 0.9 (2aa) 0.5 (1aa) 1.4 (3aa) 11.4 (24aa) 6.2 (13aa) 2.8 (6aa)

>ROP_22690 putative ABC transporter ATP-binding protein
ATGATTGTCGTAAGCGAAATCGCGGTCCGTTATGGTTCGACCCGGGCGTTGGACGGTGTG
AGTGTGTGCCTCACGCCGGGCACCGTCACGGCCGTCGTGGGGCACAACGGTTCGGGGAAG
TCGACGCTCCTGCAGTGCCTCGCCGGCATCGCGCGTGTCACGTCGGGGCGGATCGACGGC
ACGGGTGGGCTGCGCACGGCGTATGTGCCGCAACGAAATGCGGTGAGCGAACAGCTACCG
CTGACCGTGCGTGAGGTGGTGGCCATGGGGGCCTGGCAACGGCGCGGACTGTGGCGGCGG
CTCACCCCCGGCGACCGCGACGCCGTCGACGGGGCGCTGAACAGGCTGGGGCTCGCGGAT
CTCGGCGCGCGGCGGATCGGCGCGCTGTCGGGTGGGCAGCGTCAACGTGCCCTGCTCGCG
CAGGCGCTCGTGCAGCGCGGCGACCTGCTGCTCCTCGACGAGCCCACGACCGGGCTGGAC
GCGCACGCCCGCACGGTGATCGGCGACGTCGTCGCCGAAGAGGCCGCGCGGGGTGCCACC
GTCGTCGTGGCTACGCACGTATCTCGCGACGCCGACCGCGCCGACCAGGTGCTGGCCCTG
GCCGCCGGGGCGGCGCTCAGCCCACTTCGACGATGA


>ROP_22690 putative ABC transporter ATP-binding protein
MIVVSEIAVRYGSTRALDGVSVCLTPGTVTAVVGHNGSGKSTLLQCLAGIARVTSGRIDG
TGGLRTAYVPQRNAVSEQLPLTVREVVAMGAWQRRGLWRRLTPGDRDAVDGALNRLGLAD
LGARRIGALSGGQRQRALLAQALVQRGDLLLLDEPTTGLDAHARTVIGDVVAEEAARGAT
VVVATHVSRDADRADQVLALAAGAALSPLRR

NBRC No.	clone name	start	stop	length(bp)
G13-001-092	RO1FO01L80004L14	2,388,915	2,430,413	41,499
G13-001-093	RO1FO01L80010A12	2,418,033	2,454,632	36,600

We have been distributing copies of the microbial genomic DNA clones constructed during the course of each of the genomic DNA sequencing projects.
You can find more detailed information at http://www.nbrc.nite.go.jp/e/mdna-e.html.