CDS Information : ROP_22700

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Rhodococcus opacus B4 chromosome	Legend Jump
Overview  Genome Proteome  Clone

Center position		change
ID		change
Gene name		change

Organism	Rhodococcus opacus B4
Replicon	chromosome
Start / Stop / Direction	2,425,400 / 2,426,254 / +
Location	2425400..2426254
Type	CDS
Length	855 bp (284 aa)

Product	putative ABC transporter permease protein
Gene name
Functional category	Environmental Information and Cellular Processing - Membrane Transport (01310)
EC number
Note
KEGG pathway
Sequence feature
References	Family/Domain:IPR001626 Uniprot:P42361 Pubmed:7927711

BLASTP Database:UniProtKB:14.0 show BLAST table	1 E=1e-144 Q0SDN5_RHOSR Probable ABC Mn(2+)/Zn(2+) transporter, permease component Alignment 2 E=3e-88 Q50E83_STRFL Putative ABC transporter permease Alignment 3 E=7e-88 Q5YXB8_NOCFA Putative ABC transporter Alignment 4 E=4e-85 Q9RJF9_STRCO ABC transporter protein, integral membrane subunit Alignment 5 E=2e-76 Q8NUB1_CORGL ABC-type transporter, permease components ABC TRANSPORTER PROTEIN, INTEGRAL MEMBRANE SUBUNIT Alignment
HAMAP	No significant hit
InterPro Database:interpro:18.0	IPR001626 ABC-3 (Family) PF00950   ABC-3
SignalP	No significant hit
TMHMM	Transmembrane 7
SOSUI	Transmembrane 8

size of protein	284 amino acids
molecular mass	29,339.03 Da
pI	11.49
aa composition	Ala Val Leu Ile Phe Trp Pro Met Gly Ser 18.3 (52aa) 13.7 (39aa) 14.8 (42aa) 4.6 (13aa) 5.3 (15aa) 2.5 (7aa) 3.2 (9aa) 2.8 (8aa) 8.8 (25aa) 7 (20aa) Thr Cys Asn Gln Tyr Lys His Arg Asp Glu 4.9 (14aa) 0.4 (1aa) 1.1 (3aa) 0.7 (2aa) 0.7 (2aa) 0.7 (2aa) 1.1 (3aa) 5.6 (16aa) 2.5 (7aa) 1.4 (4aa)

>ROP_22700 putative ABC transporter permease protein
GTGGAATGGCTACTCGACCCCCTGACGGTGTCCTTCGTCCAGCGCGCCCTGTTCGCGGGC
ATGCTGGTGTCCGTCCTCTGCGGACTCGTCGGCACCTGGGTCGTGTTGCGGGGCATGGCG
TTCATGAGCGAGGCCATCTCGCACGGCATGCTGCCCGGCGTGGCCGTCGCCTATCTCGCG
GGCGCCAATCTCCTCGTCGGCGCGGCCGCCAGCGCGGTCGTCATGATCCTCGGCGTCGCG
TGGGTGTCGAAGAACTCGCGACTGTCCGAGGACACCGGGATCGGCCTGCTGTTCGTCGGC
ATGCTCGCGCTGGGTGTCGTGATCGTCTCGCGCGCACGGTCGTTCGCGGTCGATCTCACC
GCCTTCCTGTTCGGTGACGTGCTGTCCGCGACAGCAGGCGACCTGATCTGGCTCGCCGCG
GCGGCCGCCGTCGCCGGGATCGTCTCGGTGATCGCGTACCGCCCGTTCGTCGCCCTCGTC
TTCGACGAACGCAAGGCCCACACCCTGGGTCTGCGGCCGCGGTGGGCGCACCTCGCCCTG
CTCGCGCTCGTGGTGCTCGCGGTGGTCGCGTCGTTCCGCATCGTCGGCACCCTGCTCGTG
TTCGGACTCCTCGTCGCGCCGTCGGCCACCGCGGCGCTGTTCGGCAGGTCGATCGGCGCC
ACGATGGCCATTGCCGTCCTCCTCGGCTGGTCCGCGACGTTCGCGGGACTGATCGTGTCG
TGGAACGCGGACACCGCCGCGGGCGCCACGATCGCCGGGCTCGCCGTCCTCCAATTCTTC
GTCGCGGCCGTCACCCGGTCGGCTTCACGACGACTCCGCCCCGCCGTGTCACCCACTCCG
ATACCCGTTCGATAG


>ROP_22700 putative ABC transporter permease protein
MEWLLDPLTVSFVQRALFAGMLVSVLCGLVGTWVVLRGMAFMSEAISHGMLPGVAVAYLA
GANLLVGAAASAVVMILGVAWVSKNSRLSEDTGIGLLFVGMLALGVVIVSRARSFAVDLT
AFLFGDVLSATAGDLIWLAAAAAVAGIVSVIAYRPFVALVFDERKAHTLGLRPRWAHLAL
LALVVLAVVASFRIVGTLLVFGLLVAPSATAALFGRSIGATMAIAVLLGWSATFAGLIVS
WNADTAAGATIAGLAVLQFFVAAVTRSASRRLRPAVSPTPIPVR

NBRC No.	clone name	start	stop	length(bp)
G13-001-092	RO1FO01L80004L14	2,388,915	2,430,413	41,499
G13-001-093	RO1FO01L80010A12	2,418,033	2,454,632	36,600

We have been distributing copies of the microbial genomic DNA clones constructed during the course of each of the genomic DNA sequencing projects.
You can find more detailed information at http://www.nbrc.nite.go.jp/e/mdna-e.html.