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CDS Information : ROP_22710

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close this sectionGenomic map

Display Clone

Rhodococcus opacus B4 chromosome

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Overview 
Genome
Proteome 
Clone

close this sectionLocation

Organism Rhodococcus opacus B4
Replicon chromosome
Start / Stop / Direction 2,426,268 / 2,427,518 / +
Location 2426268..2427518
Type CDS
Length 1,251 bp (416 aa)

close this sectionAnnotation

Product hypothetical protein
Gene name
Functional category Unclassified
- hypothetical protein
EC number
Note
KEGG pathway
Sequence feature
References

close this sectionProteome

Proteome results
strainO (2D-PAGE)
strainR (2D-PAGE)
strainO (1DE-LC)
strainR (1DE-LC)
strainD (1DE-LC)
Show sequence

close this sectionComputational search results

BLASTP
Database:UniProtKB:14.0
1E=0Q0SDN4_RHOSRPossible ABC transporterAlignment
2E=2e-44Q5YXB8_NOCFAPutative ABC transporterAlignment
3E=2e-42Q9RJG0_STRCOPutative lipoproteinAlignment
4E=9e-41A1R646_ARTATPutative lipoproteinAlignment
5E=3e-37Q50E82_STRFLPutative lipoproteinAlignment
HAMAP No significant hit
InterPro
Database:interpro:18.0
IPR011044 Quinoprotein amine dehydrogenase, beta chain-like (Domain)
 [49-416]  9.7e-11 SSF50969
SSF50969   YVTN repeat-like/Quinoprotein amine dehydrogenase
IPR015943 WD40/YVTN repeat-like-containing domain (Domain)
 [58-414]  0.00021 G3DSA:2.130.10.10
G3DSA:2.130.10.10   no description
SignalP
 [1-21]  0.782 Signal
Bacteria, Gram-positive   
TMHMM No significant hit
SOSUI No significant hit

close this sectionCalculated information (Amino acid sequence)

size of protein 416 amino acids
molecular mass 42,369.78 Da
pI 4.4
aa composition
AlaValLeuIlePheTrpProMetGlySer
17.1
(71aa)
10.6
(44aa)
7
(29aa)
2.2
(9aa)
3.1
(13aa)
0.7
(3aa)
6
(25aa)
0.2
(1aa)
9.9
(41aa)
6.3
(26aa)
ThrCysAsnGlnTyrLysHisArgAspGlu
9.1
(38aa)
0.7
(3aa)
1.7
(7aa)
0.7
(3aa)
1.4
(6aa)
1.4
(6aa)
2.6
(11aa)
5.8
(24aa)
9.6
(40aa)
3.8
(16aa)

open this sectionSequence

close this sectionCovered clones

NBRC No. clone name start stop length(bp)
G13-001-092 RO1FO01L80004L14 2,388,915 2,430,413 41,499
G13-001-093 RO1FO01L80010A12 2,418,033 2,454,632 36,600

close this sectionDistribution of Our Microbial Genomic DNA clones

We have been distributing copies of the microbial genomic DNA clones constructed during the course of each of the genomic DNA sequencing projects.
You can find more detailed information at http://www.nbrc.nite.go.jp/e/mdna-e.html.