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CDS Information : ROP_22740

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close this sectionGenomic map

Display Clone

Rhodococcus opacus B4 chromosome

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Overview 
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close this sectionLocation

Organism Rhodococcus opacus B4
Replicon chromosome
Start / Stop / Direction 2,430,129 / 2,429,710 / -
Location complement(2429710..2430129)
Type CDS
Length 420 bp (139 aa)

close this sectionAnnotation

Product putative 4-carboxymuconolactone decarboxylase
Gene name
Functional category Metabolism
- Biosynthesis of Secondary Metabolites and Biodegradation of Xenobiotics
EC number 4.1.1.44
Note
KEGG pathway map:00362 KO:K01607
Sequence feature
References Uniprot:P20370 Pubmed:6783616

close this sectionProteome

Proteome results
strainR (1DE-LC)
strainO+OA (1DE-LC)
Show sequence

close this sectionComputational search results

BLASTP
Database:UniProtKB:14.0
1E=3e-69Q0SDN1_RHOSR4-carboxymuconolactone decarboxylaseAlignment
2E=6e-42B1VE00_CORU7Homolog of 4-carboxymuconolactone decarboxylaseby acc
3E=5e-28Q1E4T6_COCIMPutative uncharacterized proteinAlignment
4E=2e-27Q0C8I3_ASPTNPutative uncharacterized proteinAlignment
5E=3e-27A3QGK2_SHELP4-carboxymuconolactone decarboxylaseAlignment
HAMAP No significant hit
InterPro
Database:interpro:18.0
IPR003779 Carboxymuconolactone decarboxylase (Domain)
 [42-126]  1.9e-27 PF02627
PF02627   CMD
SignalP No significant hit
TMHMM No significant hit
SOSUI No significant hit

close this sectionCalculated information (Amino acid sequence)

size of protein 139 amino acids
molecular mass 14,970.93 Da
pI 5.22
aa composition
AlaValLeuIlePheTrpProMetGlySer
12.2
(17aa)
9.4
(13aa)
11.5
(16aa)
2.2
(3aa)
1.4
(2aa)
1.4
(2aa)
4.3
(6aa)
2.9
(4aa)
9.4
(13aa)
6.5
(9aa)
ThrCysAsnGlnTyrLysHisArgAspGlu
5.8
(8aa)
0.7
(1aa)
2.2
(3aa)
2.9
(4aa)
0.7
(1aa)
0.7
(1aa)
2.9
(4aa)
9.4
(13aa)
4.3
(6aa)
9.4
(13aa)

open this sectionSequence

close this sectionCovered clones

NBRC No. clone name start stop length(bp)
G13-001-092 RO1FO01L80004L14 2,388,915 2,430,413 41,499
G13-001-093 RO1FO01L80010A12 2,418,033 2,454,632 36,600

close this sectionDistribution of Our Microbial Genomic DNA clones

We have been distributing copies of the microbial genomic DNA clones constructed during the course of each of the genomic DNA sequencing projects.
You can find more detailed information at http://www.nbrc.nite.go.jp/e/mdna-e.html.