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CDS Information : ROP_22800

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close this sectionGenomic map

Display Clone

Rhodococcus opacus B4 chromosome

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close this sectionLocation

Organism Rhodococcus opacus B4
Replicon chromosome
Start / Stop / Direction 2,436,101 / 2,437,582 / +
Location 2436101..2437582
Type CDS
Length 1,482 bp (493 aa)

close this sectionAnnotation

Product NAD-dependent epimerase/dehydratase family protein
Gene name
Functional category Unclassified
- uncharacterized protein
EC number
Note
KEGG pathway
Sequence feature
References Family/Domain:IPR001509

close this sectionProteome

Proteome results
strainO (1DE-LC)
strainR (1DE-LC)
Show sequence

close this sectionComputational search results

BLASTP
Database:UniProtKB:14.0
1E=0Q0SDM8_RHOSRPossible epimeraseAlignment
2E=1e-178Q6AE26_LEIXXNucleoside-diphosphate-sugar epimeraseAlignment
3E=1e-178A5CSY0_CLAM3Putative uncharacterized proteinAlignment
4E=1e-176A4AHE3_9ACTNNucleoside-diphosphate-sugar epimeraseAlignment
5E=1e-176B0RDH7_CLAMSPutative oxidoreductase precursorAlignment
HAMAP No significant hit
InterPro
Database:interpro:18.0
IPR001509 NAD-dependent epimerase/dehydratase (Domain)
 [6-112]  5.8e-15 PF01370
PF01370   Epimerase
IPR001509 NAD-dependent epimerase/dehydratase (Family)
 [6-112]  5.8e-15 PF01370
PF01370   Epimerase
IPR001969 Peptidase aspartic, active site (Active_site)
 [134-145]  PS00141
PS00141   ASP_PROTEASE
IPR016040 NAD(P)-binding domain (Domain)
 [1-301]  5.1e-55 SSF51735
SSF51735   NAD(P)-binding Rossmann-fold domains
 [6-234]  5.1e-55 G3DSA:3.40.50.720
G3DSA:3.40.50.720   no description
SignalP No significant hit
TMHMM No significant hit
SOSUI No significant hit

close this sectionCalculated information (Amino acid sequence)

size of protein 493 amino acids
molecular mass 53,791.40 Da
pI 7.14
aa composition
AlaValLeuIlePheTrpProMetGlySer
10.1
(50aa)
9.3
(46aa)
9.9
(49aa)
4.9
(24aa)
2
(10aa)
2.6
(13aa)
6.3
(31aa)
2.2
(11aa)
9.5
(47aa)
6.5
(32aa)
ThrCysAsnGlnTyrLysHisArgAspGlu
5.3
(26aa)
0.2
(1aa)
2
(10aa)
2
(10aa)
2.4
(12aa)
1.8
(9aa)
2.2
(11aa)
9.1
(45aa)
6.5
(32aa)
4.9
(24aa)

open this sectionSequence

close this sectionCovered clones

NBRC No. clone name start stop length(bp)
G13-001-093 RO1FO01L80010A12 2,418,033 2,454,632 36,600

close this sectionDistribution of Our Microbial Genomic DNA clones

We have been distributing copies of the microbial genomic DNA clones constructed during the course of each of the genomic DNA sequencing projects.
You can find more detailed information at http://www.nbrc.nite.go.jp/e/mdna-e.html.