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CDS Information : ROP_22810

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close this sectionGenomic map

Display Clone

Rhodococcus opacus B4 chromosome

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Proteome 
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close this sectionLocation

Organism Rhodococcus opacus B4
Replicon chromosome
Start / Stop / Direction 2,438,163 / 2,437,561 / -
Location complement(2437561..2438163)
Type CDS
Length 603 bp (200 aa)

close this sectionAnnotation

Product hypothetical protein
Gene name
Functional category Unclassified
- hypothetical protein
EC number
Note
KEGG pathway
Sequence feature
References

close this sectionProteome

Proteome results
strainO (1DE-LC)
strainR (1DE-LC)
Show sequence

close this sectionComputational search results

BLASTP
Database:UniProtKB:14.0
1E=1e-103Q0SDM7_RHOSRProbable bacterial lipocalin proteinAlignment
2E=9e-60Q5YV79_NOCFAPutative uncharacterized proteinAlignment
3E=1e-39Q8NSP0_CORGLBacterial lipocalin
Secreted lipoprotein
Alignment
4E=1e-35Q8FRW3_COREFPutative uncharacterized proteinAlignment
5E=5e-26Q6MH35_BDEBAOuter membrane lipoprotein Blc precursorAlignment
HAMAP No significant hit
InterPro
Database:interpro:18.0
IPR002345 Lipocalin (Domain)
 [41-52]  PS00213
PS00213   LIPOCALIN
IPR002345 Lipocalin (Family)
 [41-52]  PS00213
PS00213   LIPOCALIN
IPR011038 Calycin-like (Domain)
 [19-195]  2.3e-31 SSF50814
SSF50814   Lipocalins
IPR011038 Calycin-like (Family)
 [19-195]  2.3e-31 SSF50814
SSF50814   Lipocalins
IPR012674 Calycin (Domain)
 [7-190]  5.2e-36 G3DSA:2.40.128.20
G3DSA:2.40.128.20   no description
IPR013208 Lipocalin-like (Domain)
 [40-187]  1.9e-46 PF08212
PF08212   Lipocalin_2
IPR013208 Lipocalin-like (Family)
 [40-187]  1.9e-46 PF08212
PF08212   Lipocalin_2
IPR022271 Lipocalin, ApoD type (Family)
 [1-196]  3.8e-44 PIRSF036893
PIRSF036893   Lipocalin, ApoD type
IPR022272 Lipocalin conserved site (Conserved_site)
 [41-52]  PS00213
PS00213   LIPOCALIN
SignalP
 [1-29]  1 Signal
Bacteria, Gram-positive   
TMHMM
 [7-29]  Transmembrane (i-o)
Transmembrane 1   
SOSUI
 [7-25]  Transmembrane
Transmembrane 1   

close this sectionCalculated information (Amino acid sequence)

size of protein 200 amino acids
molecular mass 21,079.77 Da
pI 5.82
aa composition
AlaValLeuIlePheTrpProMetGlySer
13.5
(27aa)
10
(20aa)
8.5
(17aa)
2
(4aa)
3.5
(7aa)
2
(4aa)
7.5
(15aa)
1
(2aa)
9
(18aa)
6.5
(13aa)
ThrCysAsnGlnTyrLysHisArgAspGlu
7.5
(15aa)
2
(4aa)
4.5
(9aa)
5
(10aa)
3.5
(7aa)
1
(2aa)
0.5
(1aa)
5.5
(11aa)
6
(12aa)
1
(2aa)

open this sectionSequence

close this sectionCovered clones

NBRC No. clone name start stop length(bp)
G13-001-093 RO1FO01L80010A12 2,418,033 2,454,632 36,600

close this sectionDistribution of Our Microbial Genomic DNA clones

We have been distributing copies of the microbial genomic DNA clones constructed during the course of each of the genomic DNA sequencing projects.
You can find more detailed information at http://www.nbrc.nite.go.jp/e/mdna-e.html.