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CDS Information : ROP_22900

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close this sectionGenomic map

Display Clone

Rhodococcus opacus B4 chromosome

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close this sectionLocation

Organism Rhodococcus opacus B4
Replicon chromosome
Start / Stop / Direction 2,446,019 / 2,446,756 / +
Location 2446019..2446756
Type CDS
Length 738 bp (245 aa)

close this sectionAnnotation

Product anti-sigma-K factor RskA
Gene name rskA
Functional category Genetic Information Processing
- Transcription
EC number
Note
KEGG pathway
Sequence feature
References Uniprot:O53729 Pubmed:17064366

close this sectionProteome

Proteome results
strainO (1DE-LC)
strainR (1DE-LC)
Show sequence

close this sectionComputational search results

BLASTP
Database:UniProtKB:14.0
1E=1e-121Q0SDL8_RHOSRPutative uncharacterized proteinAlignment
2E=2e-52RSKA_MYCSKAnti-sigma-K factor rskA
Regulator of sigK
Alignment
3E=2e-52RSKA_MYCSJAnti-sigma-K factor rskA
Regulator of sigK
Alignment
4E=2e-52RSKA_MYCSSAnti-sigma-K factor rskA
Regulator of sigK
Alignment
5E=8e-52RSKA_MYCVPAnti-sigma-K factor rskA
Regulator of sigK
Alignment
HAMAP No significant hit
InterPro No significant hit
SignalP No significant hit
TMHMM
 [100-122]  Transmembrane (i-o)
Transmembrane 1   
SOSUI
 [101-123]  Transmembrane
Transmembrane 1   

close this sectionCalculated information (Amino acid sequence)

size of protein 245 amino acids
molecular mass 25,356.37 Da
pI 3.93
aa composition
AlaValLeuIlePheTrpProMetGlySer
15.9
(39aa)
12.2
(30aa)
7.8
(19aa)
4.1
(10aa)
1.6
(4aa)
0.4
(1aa)
8.2
(20aa)
2
(5aa)
6.5
(16aa)
6.1
(15aa)
ThrCysAsnGlnTyrLysHisArgAspGlu
6.1
(15aa)
0
(0aa)
1.6
(4aa)
5.7
(14aa)
1.2
(3aa)
0.4
(1aa)
1.6
(4aa)
4.5
(11aa)
9.4
(23aa)
4.5
(11aa)

open this sectionSequence

close this sectionCovered clones

NBRC No. clone name start stop length(bp)
G13-001-093 RO1FO01L80010A12 2,418,033 2,454,632 36,600
G13-001-094 RO1FO01L80013F24 2,441,995 2,482,824 40,830

close this sectionDistribution of Our Microbial Genomic DNA clones

We have been distributing copies of the microbial genomic DNA clones constructed during the course of each of the genomic DNA sequencing projects.
You can find more detailed information at http://www.nbrc.nite.go.jp/e/mdna-e.html.