small fontnormal fontlarge fontmail to

CDS Information : ROP_23620

close allopen/close all

close this sectionGenomic map

Display Clone

Rhodococcus opacus B4 chromosome

Legend Jump
Overview 
Genome
Proteome 
Clone

close this sectionLocation

Organism Rhodococcus opacus B4
Replicon chromosome
Start / Stop / Direction 2,542,344 / 2,540,824 / -
Location complement(2540824..2542344)
Type CDS
Length 1,521 bp (506 aa)

close this sectionAnnotation

Product putative fatty-acid--CoA ligase
Synonym: acyl-CoA synthetase
Gene name
Functional category Metabolism
- Lipid Metabolism
EC number 6.2.1.-
Note
KEGG pathway
Sequence feature
References Uniprot:P69451 Pubmed:1460045,12034706

close this sectionComputational search results

BLASTP
Database:UniProtKB:14.0
1E=1e-172A0QZL2_MYCS2Feruloyl-CoA synthetaseAlignment
2E=1e-166B1MKY3_MYCABPutative long-chain-fatty-acid CoA ligaseAlignment
3E=1e-163A1TC70_MYCVPAMP-dependent synthetase and ligaseAlignment
4E=1e-161Q1BBV8_MYCSSAMP-dependent synthetase and ligaseAlignment
5E=1e-161A1UD40_MYCSKAMP-dependent synthetase and ligaseAlignment
HAMAP No significant hit
InterPro
Database:interpro:18.0
IPR000873 AMP-dependent synthetase and ligase (Domain)
 [28-436]  1e-119 PF00501
PF00501   AMP-binding
 [163-174]  PS00455
PS00455   AMP_BINDING
IPR020845 AMP-binding, conserved site (Conserved_site)
 [163-174]  PS00455
PS00455   AMP_BINDING
SignalP No significant hit
TMHMM No significant hit
SOSUI No significant hit

close this sectionCalculated information (Amino acid sequence)

size of protein 506 amino acids
molecular mass 54,774.56 Da
pI 6.44
aa composition
AlaValLeuIlePheTrpProMetGlySer
11.5
(58aa)
7.5
(38aa)
10.1
(51aa)
5.3
(27aa)
2.8
(14aa)
1.2
(6aa)
5.3
(27aa)
3
(15aa)
8.7
(44aa)
4.5
(23aa)
ThrCysAsnGlnTyrLysHisArgAspGlu
7.9
(40aa)
1
(5aa)
1.8
(9aa)
1.8
(9aa)
2.2
(11aa)
2.6
(13aa)
4.7
(24aa)
6.5
(33aa)
7.1
(36aa)
4.5
(23aa)

open this sectionSequence

close this sectionCovered clones

NBRC No. clone name start stop length(bp)
G13-001-097 RO1FO01L80002M12 2,526,375 2,565,851 39,477

close this sectionDistribution of Our Microbial Genomic DNA clones

We have been distributing copies of the microbial genomic DNA clones constructed during the course of each of the genomic DNA sequencing projects.
You can find more detailed information at http://www.nbrc.nite.go.jp/e/mdna-e.html.