DOGAN: CDS Information : ROP

Display	Clone

Rhodococcus opacus B4 chromosome

Overview
Genome
Proteome
Clone

Center position		change
ID		change
Gene name		change

Metabolism

Carbohydrate Metabolism

Glycolysis / Gluconeogenesis (00010)

Pyruvate metabolism (00620)

Glyoxylate and dicarboxylate metabolism (00630)

Propanoate metabolism (00640)

Butanoate metabolism (00650)

Inositol metabolism (00031)

Inositol phosphate metabolism (00562)

Citrate cycle (TCA cycle) (00020)

Pentose phosphate pathway (00030)

Fructose and mannose metabolism (00051)

Galactose metabolism (00052)

Ascorbate and aldarate metabolism (00053)

Starch and sucrose metabolism (00500)

Aminosugars metabolism (00530)

Nucleotide sugars metabolism (00520)

Energy Metabolism

electron transport system (00190)

ATP synthesis (00193)

Sulfur metabolism (00920)

ferredoxin, thioredoxin, rubredoxin

Lipid Metabolism

Fatty acid biosynthesis (path 1) (00061)

Fatty acid biosynthesis (path 2) (00062)

Fatty acid metabolism (00071)

Synthesis and degradation of ketone bodies (00072)

Sterols biosynthesis (00100)

Glycerolipid metabolism (00561)

Phospholipid degradation (00580)

Nucleotide Metabolism

Purine metabolism (00230)

Pyrimidine metabolism (00240)

Amino Acid Metabolism

Glutamate metabolism & Nitrogen assimilation (00910)

Arginine and proline metabolism (00330)

Histidine metabolism (00340)

Tyrosine metabolism (00350)

Phenylalanine metabolism (00360)

Tryptophan metabolism (00380)

Phenylalanine, tyrosine and tryptophan biosynthesis (00400)

Urea cycle and metabolism of amino groups (00220)

Alanine and aspartate metabolism (00252)

Glycine, serine and threonine metabolism (00260)

Methionine metabolism (00271)

Cysteine metabolism (00272)

Valine, leucine and isoleucine degradation (00280)

Valine, leucine and isoleucine biosynthesis (00660)

Lysine biosynthesis (00300)

Lysine degradation (00310)

Metabolism of Cofactors and Vitamins

Thiamine metabolism (00730)

Riboflavin metabolism (00740)

Vitamin B6 metabolism (00750)

Nicotinate and nicotinamide metabolism (00760)

Pantothenate and CoA biosynthesis (00770)

Biotin metabolism (00780)

Folate biosynthesis (00790)

Porphyrin and chlorophyll metabolism (00860)

Ubiquinone biosynthesis (00130)

Biosynthesis of Secondary Metabolites and Biodegradation of Xenobiotics

Degradation of aromatic compounds

Degradation of others

Others

Genetic Information Processing

Transcription

RNA polymerase (03020)

HTH family transcriptional regulators

sigma factor

Translation

Ribosome (03010)

Translation factors

Aminoacyl-tRNA biosynthesis (00970)

Replication and Repair

DNA polymerase (03030)

Replication complex

Others

Environmental Information and Cellular Processing

Membrane Transport (01310)

ABC transporter

transporters

Protein export

Phosphotransferase system (PTS)

Signal Transduction

Two-component system

Cellular Processes

Peptidoglycan biosynthesis (00550)

Cell wall/membrane/envelope biogenesis

Cell division

Cell Motility

Others

Unclassified

putative function (general)

uncharacterized protein

Transposon-related functions

hypothetical protein

hypothetical protein (prediction only)

Genome	Display	Sync
chromosome

Organism	Rhodococcus opacus B4
Replicon	chromosome
Start / Stop / Direction	2,713,939 / 2,712,530 / -
Location	complement(2712530..2713939)
Type	CDS
Length	1,410 bp (469 aa)

Product	aldehyde dehydrogenase
Gene name
Functional category	Metabolism - Others
EC number	1.2.1.-
Note
KEGG pathway
Sequence feature
References	Uniprot:P30838 Pubmed:1737758 Uniprot:O32384 Pubmed:7765727

BLASTP
Database:UniProtKB:14.0

show BLAST table

1	E=1e-130	Q1BFX2_MYCSS	Aldehyde dehydrogenase	Alignment
2	E=1e-130	A1U910_MYCSK	Aldehyde dehydrogenase	Alignment
3	E=1e-130	A3PSL6_MYCSJ	Aldehyde dehydrogenase	Alignment
4	E=1e-127	A5TYM2_MYCTA	Putative aldehyde dehydrogenase (NAD+) dependent	Alignment
5	E=1e-127	A1QMS4_MYCTF	Putative uncharacterized protein Hypothetical aldehyde dehydrogenase (NAD+) dependent	Alignment

HAMAP

No significant hit

InterPro
Database:interpro:18.0

IPR002086 Aldehyde dehydrogenase (Domain)
	PF00171 Aldedh
	PS00687 ALDEHYDE_DEHYDR_GLU
IPR012394 Aldehyde dehydrogenase NAD(P)-dependent (Family)
	PIRSF036492 Aldehyde dehydrogenase
	PTHR11699:SF15 ALDEHYDE DEHYDROGENASE
IPR015590 Aldehyde Dehydrogenase_ (Domain)
	PTHR11699 ALDEHYDE DEHYDROGENASE-RELATED
IPR016160 Aldehyde dehydrogenase, conserved site (Conserved_site)
	PS00687 ALDEHYDE_DEHYDR_GLU
IPR016161 Aldehyde/histidinol dehydrogenase (Domain)
	SSF53720 ALDH-like
IPR016162 Aldehyde dehydrogenase, N-terminal (Domain)
	G3DSA:3.40.605.10 no description

SignalP

No significant hit

TMHMM

No significant hit

SOSUI

Transmembrane 1

size of protein

469 amino acids

molecular mass

50,452.74 Da

pI

7.78

aa composition

Ala	Val	Leu	Ile	Phe	Trp	Pro	Met	Gly	Ser
12.8 (60aa)	9.4 (44aa)	11.9 (56aa)	2.1 (10aa)	3.4 (16aa)	1.3 (6aa)	6.6 (31aa)	1.7 (8aa)	7.2 (34aa)	5.8 (27aa)
Thr	Cys	Asn	Gln	Tyr	Lys	His	Arg	Asp	Glu
7.5 (35aa)	0.4 (2aa)	2.8 (13aa)	2.6 (12aa)	1.5 (7aa)	3 (14aa)	2.1 (10aa)	7.5 (35aa)	5.3 (25aa)	5.1 (24aa)

>ROP_25250 aldehyde dehydrogenase
ATGAGCACCGCAACTCGCAAGGCCGCCCCTGCACCGGCACCGATCGCCGCCACCATGGAT
GCCTCGGCGCAGGTCGCTATGCTGCGCAAGACATTCCGCAGCGGACGCACCCGCTCGCTC
ACCTGGCGTCGCGCCCAGCTCGAGGGGCTCTCCCGGCTGTTGTCCGAGCGGGAGACGCAT
CTCGCCGCCGCGGTCGAACAGGATCTGGGACGCTCGGCGATCGAGACCTTCATGGGTGAC
CTCGCCCCGGTCCGCGCCGAGATCCGGCACACACTGAAGAACCTGGAGCGGTGGTCACGG
CCGCAGCGTGCAGCGCTGCCCGTGACGCAGCAGCCGGGAAAGGCATGGACCGTGGCGGAA
CCGAAGGGCGTGGTCCTGGTGATCGGTGCCTGGAACTTCCCTCTCCTGCTCACCCTCCAA
CCCCTCGTGAGCGCCCTGGCGGCAGGCAACGTCGTGCTCGTCAAGCCGTCGGAGTTGGCC
CCGCGCACCGCGCAGGTGCTGGCCGAGTTGCTACCGAAGTACCTCGACCCGTCCGCGGTC
GTCGTCGCCAACGGAGGCGCCGAGATGAGCACCGCGCTCCTGAAGGAGAAGTTCGACCAT
GTGTTCTTCACCGGATCAGCGCGTGTCAGCCGCCTGGTCGCGACCGCGGCCGCCGAGCAC
CTCACCCCCGTGACGCTCGAACTCGGCGGCAAGAGCCCGGTGATCGTGGCGGCCGACGCC
GACCTCGATGTCGCGGCGCGGCGGATCGCGTGGGCGAAATGCGTCAACAGCGGACAGGCC
TGCATCGCACCCGATTACGTTCTCGTCGAGGACTCGGTGCGGTCGGCGTTCGTCGAACGG
CTCCTGAGGGAGCTCGACAACGCCTGGCGAGCGGAACCCACCCGGATCGTCAATGAGAAC
CACTTCGATCGCCTCGCCGCACTCCTGGACGGACACGGCGGCGACACGACCGGTGGGCAA
CGCGACCGCGGCACCCTCCGATTCGGCGCCACGGTCGTCACCGACCCCGATCTCGACTCG
CCGCTCATGACCGAGGAGATCTTCGGGCCGATTCTGCCGGTGGTGACGGTGACGTCCGTC
GACGACGCCGTCGAGATGGTGAACAGCCGGCCGAAGCCTCTCGCGCTGTATCTGTTCACA
GAGAACGACGACACCGTGCAGACCGTCCTGGGCAACACCTCCTCGGGCTCGGTCGGTGTC
AATCACCTCCTCTACCAGCTACTCGTCCCCGACCTCCCGTTCGGCGGCGTCGGTGCCTCC
GGGACCGGCGACTACCACGGCGAGCACGGGTTCGCGACCTTCAGCCATCGAAAGGCCGTG
TTGCGCAAGCCGACGAATCCGGATCCGTCGTTCGCCTACCCGCCCTACGGAGCCTTCGCA
ACCCGGCTGCTCCGCCGCCTCATGGGATAG


>ROP_25250 aldehyde dehydrogenase
MSTATRKAAPAPAPIAATMDASAQVAMLRKTFRSGRTRSLTWRRAQLEGLSRLLSERETH
LAAAVEQDLGRSAIETFMGDLAPVRAEIRHTLKNLERWSRPQRAALPVTQQPGKAWTVAE
PKGVVLVIGAWNFPLLLTLQPLVSALAAGNVVLVKPSELAPRTAQVLAELLPKYLDPSAV
VVANGGAEMSTALLKEKFDHVFFTGSARVSRLVATAAAEHLTPVTLELGGKSPVIVAADA
DLDVAARRIAWAKCVNSGQACIAPDYVLVEDSVRSAFVERLLRELDNAWRAEPTRIVNEN
HFDRLAALLDGHGGDTTGGQRDRGTLRFGATVVTDPDLDSPLMTEEIFGPILPVVTVTSV
DDAVEMVNSRPKPLALYLFTENDDTVQTVLGNTSSGSVGVNHLLYQLLVPDLPFGGVGAS
GTGDYHGEHGFATFSHRKAVLRKPTNPDPSFAYPPYGAFATRLLRRLMG

NBRC No.	clone name	start	stop	length(bp)
G13-001-103	RO1FO01L80016P23	2,685,204	2,729,676	44,473

We have been distributing copies of the microbial genomic DNA clones constructed during the course of each of the genomic DNA sequencing projects.
You can find more detailed information at http://www.nbrc.nite.go.jp/e/mdna-e.html.

CDS Information : ROP_25250

Genomic map

Rhodococcus opacus B4 chromosome

Location

Annotation

Computational search results

Calculated information (Amino acid sequence)

Sequence

Covered clones

Distribution of Our Microbial Genomic DNA clones