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CDS Information : ROP_26400

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close this sectionGenomic map

Display Clone

Rhodococcus opacus B4 chromosome

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Overview 
Genome
Proteome 
Clone

close this sectionLocation

Organism Rhodococcus opacus B4
Replicon chromosome
Start / Stop / Direction 2,839,937 / 2,838,582 / -
Location complement(2838582..2839937)
Type CDS
Length 1,356 bp (451 aa)

close this sectionAnnotation

Product putative MFS transporter
Gene name
Functional category Environmental Information and Cellular Processing
- Membrane Transport (01310)
EC number
Note
KEGG pathway
Sequence feature
References Family/Domain:IPR011701

close this sectionComputational search results

BLASTP
Database:UniProtKB:14.0
1E=0Q0SCL6_RHOSRShikimate transport proteinAlignment
2E=1e-159A0JX99_ARTS2Major facilitator superfamily MFS_1Alignment
3E=1e-154A0K0N9_ARTS2Major facilitator superfamily MFS_1Alignment
4E=1e-142A4Q9Y0_CORGBPutative uncharacterized proteinAlignment
5E=1e-142Q5KRY0_CORGLPutative metabolite transport proteinAlignment
HAMAP No significant hit
InterPro
Database:interpro:18.0
IPR005829 Sugar transporter, conserved site (Conserved_site)
 [307-324]  PS00216
PS00216   SUGAR_TRANSPORT_1
IPR005829 Sugar transporter superfamily (Family)
 [307-324]  PS00216
PS00216   SUGAR_TRANSPORT_1
IPR007114 Major facilitator superfamily (Family)
 [27-437]  33.752 PS50850
PS50850   MFS
IPR011701 Major facilitator superfamily MFS-1 (Domain)
 [31-405]  2.5e-21 PF07690
PF07690   MFS_1
IPR011701 Major facilitator superfamily MFS_1 (Family)
 [31-405]  2.5e-21 PF07690
PF07690   MFS_1
IPR016196 Major facilitator superfamily, general substrate transporter (Domain)
 [1-442]  9.5e-66 SSF103473
SSF103473   MFS general substrate transporter
IPR020846 Major facilitator superfamily domain (Domain)
 [27-437]  33.752 PS50850
PS50850   MFS
SignalP No significant hit
TMHMM
 [28-50]  Transmembrane (i-o) [65-87]  Transmembrane (o-i) [100-119]  Transmembrane (i-o) [124-143]  Transmembrane (o-i) [164-186]  Transmembrane (i-o) [201-218]  Transmembrane (o-i) [256-278]  Transmembrane (i-o) [288-307]  Transmembrane (o-i) [319-341]  Transmembrane (i-o) [346-368]  Transmembrane (o-i) [381-403]  Transmembrane (i-o) [408-430]  Transmembrane (o-i)
Transmembrane 12   
SOSUI
 [41-63]  Transmembrane [68-90]  Transmembrane [100-122]  Transmembrane [124-146]  Transmembrane [172-193]  Transmembrane [198-219]  Transmembrane [260-281]  Transmembrane [318-340]  Transmembrane [342-364]  Transmembrane [384-406]  Transmembrane [411-432]  Transmembrane
Transmembrane 11   

close this sectionCalculated information (Amino acid sequence)

size of protein 451 amino acids
molecular mass 47,919.10 Da
pI 8.44
aa composition
AlaValLeuIlePheTrpProMetGlySer
13.3
(60aa)
9.5
(43aa)
11.1
(50aa)
5.3
(24aa)
7.1
(32aa)
2.2
(10aa)
5.3
(24aa)
2.2
(10aa)
9.5
(43aa)
6.7
(30aa)
ThrCysAsnGlnTyrLysHisArgAspGlu
8.2
(37aa)
1.1
(5aa)
0.9
(4aa)
1.6
(7aa)
2.7
(12aa)
2.2
(10aa)
1.1
(5aa)
4.2
(19aa)
2.2
(10aa)
3.5
(16aa)

open this sectionSequence

close this sectionCovered clones

NBRC No. clone name start stop length(bp)
G13-001-108 RO1FO01L80010M10 2,814,616 2,852,267 37,652
G13-001-109 RO1FO01L80016C16 2,838,166 2,881,933 43,768

close this sectionDistribution of Our Microbial Genomic DNA clones

We have been distributing copies of the microbial genomic DNA clones constructed during the course of each of the genomic DNA sequencing projects.
You can find more detailed information at http://www.nbrc.nite.go.jp/e/mdna-e.html.