small fontnormal fontlarge fontmail to

CDS Information : ROP_26600

close allopen/close all

close this sectionGenomic map

Display Clone

Rhodococcus opacus B4 chromosome

Legend Jump
Overview 
Genome
Proteome 
Clone

close this sectionLocation

Organism Rhodococcus opacus B4
Replicon chromosome
Start / Stop / Direction 2,863,682 / 2,862,486 / -
Location complement(2862486..2863682)
Type CDS
Length 1,197 bp (398 aa)

close this sectionAnnotation

Product CaiB/BaiF family protein
Gene name
Functional category Unclassified
- uncharacterized protein
EC number
Note
KEGG pathway
Sequence feature
References Family/Domain:IPR003673

close this sectionProteome

Proteome results
strainR (1DE-LC)
Show sequence

close this sectionComputational search results

BLASTP
Database:UniProtKB:14.0
1E=0Q0SCJ5_RHOSRProbable formyl-CoA transferaseAlignment
2E=1e-173A0QUD7_MYCS2L-carnitine dehydratase/bile acid-inducible protein FAlignment
3E=1e-148A3TQA8_9MICOL-carnitine dehydratase/bile acid-inducible protein FAlignment
4E=1e-146A0JWH3_ARTS2L-carnitine dehydratase/bile acid-inducible protein FAlignment
5E=1e-133A1SGT5_NOCSJL-carnitine dehydratase/bile acid-inducible protein FAlignment
HAMAP No significant hit
InterPro
Database:interpro:18.0
IPR003673 L-carnitine dehydratase/bile acid-inducible protein F (Family)
 [8-394]  5.8e-120 SSF89796
SSF89796   CoA-transferase family III (CaiB/BaiF)
 [23-391]  4.2e-94 PTHR11837
PTHR11837   ALPHA METHYLACYL-COA RACEMASE
 [4-394]  8e-82 G3DSA:3.40.50.10540
G3DSA:3.40.50.10540   no description
 [82-270]  7.7e-65 PF02515
PF02515   CoA_transf_3
IPR023606 CoA-transferase family III domain (Domain)
 [8-394]  5.8e-120 SSF89796
SSF89796   CoA-transferase family III (CaiB/BaiF)
 [4-394]  8e-82 G3DSA:3.40.50.10540
G3DSA:3.40.50.10540   no description
SignalP No significant hit
TMHMM No significant hit
SOSUI No significant hit

close this sectionCalculated information (Amino acid sequence)

size of protein 398 amino acids
molecular mass 42,858.27 Da
pI 4.78
aa composition
AlaValLeuIlePheTrpProMetGlySer
8.5
(34aa)
9.3
(37aa)
9.5
(38aa)
3
(12aa)
3.3
(13aa)
1.3
(5aa)
5.8
(23aa)
2.5
(10aa)
11.8
(47aa)
4.5
(18aa)
ThrCysAsnGlnTyrLysHisArgAspGlu
7
(28aa)
0.5
(2aa)
2.5
(10aa)
2.8
(11aa)
1.5
(6aa)
2.3
(9aa)
2.5
(10aa)
7.3
(29aa)
7
(28aa)
7
(28aa)

open this sectionSequence

close this sectionCovered clones

NBRC No. clone name start stop length(bp)
G13-001-109 RO1FO01L80016C16 2,838,166 2,881,933 43,768

close this sectionDistribution of Our Microbial Genomic DNA clones

We have been distributing copies of the microbial genomic DNA clones constructed during the course of each of the genomic DNA sequencing projects.
You can find more detailed information at http://www.nbrc.nite.go.jp/e/mdna-e.html.