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CDS Information : ROP_44590

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close this sectionGenomic map

Display Clone

Rhodococcus opacus B4 (= NBRC 108011) chromosome

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close this sectionLocation

Organism Rhodococcus opacus B4 (= NBRC 108011)
Replicon chromosome
Start / Stop / Direction 4,806,854 / 4,808,095 / +
Location 4806854..4808095
Type CDS
Length 1,242 bp (413 aa)

close this sectionAnnotation

Product 4-aminobutyrate aminotransferase
Synonym: GABA transaminase
Gene name gabT
Functional category Metabolism
- Amino Acid Metabolism
EC number 2.6.1.19
Note
KEGG pathway map:00251 KO:K00823
map:00410 KO:K00823
map:00650 KO:K00823
map:00252 KO:K00823
map:00640 KO:K00823
Sequence feature
References Uniprot:P22256 Pubmed:2254272
Uniprot:P50457 Pubmed:15590624

close this sectionProteome

Proteome results
strainR (1DE-LC)
strainD (1DE-LC)
strainO+OA (1DE-LC)
Show sequence

close this sectionComputational search results

BLASTP
Database:UniProtKB:14.0
1E=0Q0S806_RHOSR4-aminobutyrate transaminaseAlignment
2E=1e-161A0QV88_MYCS24-aminobutyrate aminotransferaseAlignment
3E=1e-161B1MJY0_MYCABProbable aminotransferaseAlignment
4E=1e-157A3KJR3_STRAMPutative aminotransferaseAlignment
5E=1e-157A4FG62_SACEN4-aminobutyrate transaminaseAlignment
HAMAP No significant hit
InterPro
Database:interpro:18.0
IPR005814 Aminotransferase class-III (Family)
 [15-352]  1.1e-121 PF00202
PF00202   Aminotran_3
 [13-413]  1.7e-182 PTHR11986
PTHR11986   AMINOTRANSFERASE CLASS III
 [229-266]  PS00600
PS00600   AA_TRANSFER_CLASS_3
IPR015421 Pyridoxal phosphate-dependent transferase, major region, subdomain 1 (Domain)
 [48-311]  5.8e-83 G3DSA:3.40.640.10
G3DSA:3.40.640.10   no description
IPR015424 Pyridoxal phosphate-dependent transferase, major region (Domain)
 [12-413]  3.6e-124 SSF53383
SSF53383   PLP-dependent transferases
SignalP No significant hit
TMHMM No significant hit
SOSUI No significant hit

close this sectionCalculated information (Amino acid sequence)

size of protein 413 amino acids
molecular mass 43,643.65 Da
pI 5.93
aa composition
AlaValLeuIlePheTrpProMetGlySer
12.3
(51aa)
7.5
(31aa)
9.7
(40aa)
4.8
(20aa)
4.6
(19aa)
0.7
(3aa)
4.4
(18aa)
1.9
(8aa)
12.1
(50aa)
5.3
(22aa)
ThrCysAsnGlnTyrLysHisArgAspGlu
7
(29aa)
1
(4aa)
1.9
(8aa)
3.4
(14aa)
2.4
(10aa)
2.7
(11aa)
2.9
(12aa)
5.1
(21aa)
3.9
(16aa)
6.3
(26aa)

open this sectionSequence

close this sectionCovered clones

NBRC No. clone name start stop length(bp)
G13-001-182 RO1FO01L80011L23 4,777,741 4,816,026 38,286
G13-001-183 RO1FO01L80013D22 4,803,300 4,846,645 43,346

close this sectionDistribution of Our Microbial Genomic DNA clones

We have been distributing copies of the microbial genomic DNA clones constructed during the course of each of the genomic DNA sequencing projects.
You can find more detailed information at http://www.nbrc.nite.go.jp/e/mdna-e.html.