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CDS Information : ROP_44950

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close this sectionGenomic map

Display Clone

Rhodococcus opacus B4 chromosome

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Overview 
Genome
Proteome 
Clone

close this sectionLocation

Organism Rhodococcus opacus B4
Replicon chromosome
Start / Stop / Direction 4,848,860 / 4,850,059 / +
Location 4848860..4850059
Type CDS
Length 1,200 bp (399 aa)

close this sectionAnnotation

Product putative MFS transporter
Gene name
Functional category Environmental Information and Cellular Processing
- Membrane Transport (01310)
EC number
Note Similar to the chloramphenicol resistance protein Cmlv of Streptomyces violaceus (Q56147).
KEGG pathway
Sequence feature
References Family/Domain:IPR011701

close this sectionComputational search results

BLASTP
Database:UniProtKB:14.0
1E=0Q0S7W8_RHOSRProbable sugar efflux transporter, MFS superfamily proteinAlignment
2E=1e-153A0JVY7_ARTS2Major facilitator superfamily MFS_1Alignment
3E=1e-150A0JT57_ARTS2Major facilitator superfamily MFS_1Alignment
4E=1e-149B1E5G7_9MICCMajor facilitator superfamily MFS_1Alignment
5E=1e-148A1R362_ARTATPutative transmembrane efflux protein
MFS
Alignment
HAMAP No significant hit
InterPro
Database:interpro:18.0
IPR007114 Major facilitator superfamily (Family)
 [4-383]  35.219 PS50850
PS50850   MFS
IPR011701 Major facilitator superfamily MFS-1 (Domain)
 [8-352]  1.3e-47 PF07690
PF07690   MFS_1
IPR011701 Major facilitator superfamily MFS_1 (Family)
 [8-352]  1.3e-47 PF07690
PF07690   MFS_1
IPR016196 Major facilitator superfamily, general substrate transporter (Domain)
 [1-392]  3.3e-65 SSF103473
SSF103473   MFS general substrate transporter
IPR020846 Major facilitator superfamily domain (Domain)
 [4-383]  35.219 PS50850
PS50850   MFS
SignalP No significant hit
TMHMM
 [3-25]  Transmembrane (i-o) [40-62]  Transmembrane (o-i) [69-88]  Transmembrane (i-o) [98-120]  Transmembrane (o-i) [127-149]  Transmembrane (i-o) [159-181]  Transmembrane (o-i) [206-228]  Transmembrane (i-o) [243-260]  Transmembrane (o-i) [267-289]  Transmembrane (i-o) [294-313]  Transmembrane (o-i) [333-355]  Transmembrane (i-o) [359-381]  Transmembrane (o-i)
Transmembrane 12   
SOSUI
 [4-26]  Transmembrane [41-63]  Transmembrane [70-91]  Transmembrane [99-121]  Transmembrane [129-151]  Transmembrane [159-181]  Transmembrane [206-228]  Transmembrane [236-258]  Transmembrane [268-289]  Transmembrane [292-314]  Transmembrane [331-353]  Transmembrane [360-382]  Transmembrane
Transmembrane 12   

close this sectionCalculated information (Amino acid sequence)

size of protein 399 amino acids
molecular mass 40,922.41 Da
pI 9.48
aa composition
AlaValLeuIlePheTrpProMetGlySer
14.5
(58aa)
11.5
(46aa)
12.8
(51aa)
5.3
(21aa)
6.8
(27aa)
1.5
(6aa)
3.8
(15aa)
3.5
(14aa)
12.8
(51aa)
5.5
(22aa)
ThrCysAsnGlnTyrLysHisArgAspGlu
7.3
(29aa)
0.3
(1aa)
2
(8aa)
1.8
(7aa)
1.3
(5aa)
1.3
(5aa)
0.3
(1aa)
3.8
(15aa)
2
(8aa)
2.3
(9aa)

open this sectionSequence

close this sectionCovered clones

NBRC No. clone name start stop length(bp)
G13-001-184 RO1FO01L80013A23 4,827,796 4,866,471 38,676

close this sectionDistribution of Our Microbial Genomic DNA clones

We have been distributing copies of the microbial genomic DNA clones constructed during the course of each of the genomic DNA sequencing projects.
You can find more detailed information at http://www.nbrc.nite.go.jp/e/mdna-e.html.