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CDS Information : ROP_51680

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close this sectionGenomic map

Display Clone

Rhodococcus opacus B4 (= NBRC 108011) chromosome

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Overview 
Genome
Proteome 
Clone

close this sectionLocation

Organism Rhodococcus opacus B4 (= NBRC 108011)
Replicon chromosome
Start / Stop / Direction 5,640,451 / 5,641,494 / +
Location 5640451..5641494
Type CDS
Length 1,044 bp (347 aa)

close this sectionAnnotation

Product ATP-dependent DNA ligase LigC
Gene name ligC
Functional category Genetic Information Processing
- Replication and Repair
EC number 6.5.1.1
Note
KEGG pathway KO:K01971
Sequence feature
References Uniprot:Q9HHC4 Pubmed:11053387
Uniprot:O69698 Pubmed:14985346,15778718

close this sectionProteome

Proteome results
strainR (1DE-LC)
strainD (1DE-LC)
Show sequence

close this sectionComputational search results

BLASTP
Database:UniProtKB:14.0
1E=0Q0S6E8_RHOSRPossible DNA ligase (ATP), C-terminalAlignment
2E=1e-128A1TGK9_MYCVPATP dependent DNA ligaseAlignment
3E=1e-127A0R5T2_MYCS2DNA ligaseAlignment
4E=1e-127Q1B264_MYCSSATP dependent DNA ligaseAlignment
5E=1e-127A1UMY6_MYCSKATP dependent DNA ligaseAlignment
HAMAP No significant hit
InterPro
Database:interpro:18.0
IPR000977 ATP-dependent DNA ligase (Family)
 [33-41]  PS00697
PS00697   DNA_LIGASE_A1
 [1-342]  1.3e-128 PTHR10459
PTHR10459   ATP-DEPENDENT DNA LIGASE FAMILY
IPR012309 ATP dependent DNA ligase, C-terminal (Domain)
 [223-300]  0.0077 PF04679
PF04679   DNA_ligase_A_C
IPR012310 ATP dependent DNA ligase, central (Domain)
 [11-206]  1.4e-44 PF01068
PF01068   DNA_ligase_A_M
IPR012340 Nucleic acid-binding, OB-fold (Domain)
 [209-340]  0.00019 G3DSA:2.40.50.140
G3DSA:2.40.50.140   no description
IPR016059 ATP-dependent DNA ligase, conserved site (Conserved_site)
 [33-41]  PS00697
PS00697   DNA_LIGASE_A1
SignalP No significant hit
TMHMM No significant hit
SOSUI No significant hit

close this sectionCalculated information (Amino acid sequence)

size of protein 347 amino acids
molecular mass 38,303.52 Da
pI 4.98
aa composition
AlaValLeuIlePheTrpProMetGlySer
10.4
(36aa)
10.1
(35aa)
9.5
(33aa)
1.7
(6aa)
3.5
(12aa)
2
(7aa)
6.6
(23aa)
2.6
(9aa)
8.4
(29aa)
5.2
(18aa)
ThrCysAsnGlnTyrLysHisArgAspGlu
4
(14aa)
1.2
(4aa)
0.9
(3aa)
2.9
(10aa)
2
(7aa)
3.2
(11aa)
1.4
(5aa)
9.2
(32aa)
8.1
(28aa)
7.2
(25aa)

open this sectionSequence

close this sectionCovered clones

NBRC No. clone name start stop length(bp)
G13-001-213 RO1FO01L80011D04 5,614,716 5,656,268 41,553

close this sectionDistribution of Our Microbial Genomic DNA clones

We have been distributing copies of the microbial genomic DNA clones constructed during the course of each of the genomic DNA sequencing projects.
You can find more detailed information at http://www.nbrc.nite.go.jp/e/mdna-e.html.