small fontnormal fontlarge fontmail to

CDS Information : ROP_51690

close allopen/close all

close this sectionGenomic map

Display Clone

Rhodococcus opacus B4 (= NBRC 108011) chromosome

Legend Jump
Overview 
Genome
Proteome 
Clone

close this sectionLocation

Organism Rhodococcus opacus B4 (= NBRC 108011)
Replicon chromosome
Start / Stop / Direction 5,641,495 / 5,642,523 / +
Location 5641495..5642523
Type CDS
Length 1,029 bp (342 aa)

close this sectionAnnotation

Product hypothetical protein
Gene name
Functional category Unclassified
- hypothetical protein
EC number
Note
KEGG pathway
Sequence feature
References

close this sectionProteome

Proteome results
strainD (1DE-LC)
strainO+OA (1DE-LC)
Show sequence

close this sectionComputational search results

BLASTP
Database:UniProtKB:14.0
1E=0Q0S6E7_RHOSRPossible DNA ligase (ATP), N-terminalAlignment
2E=1e-144Q744K1_MYCPAPutative uncharacterized proteinAlignment
3E=1e-143A0Q9R1_MYCA1DNA polymerase LigD, polymerase domainAlignment
4E=1e-142A4KMJ7_MYCTUPutative uncharacterized proteinAlignment
5E=1e-142O69697_MYCTUPutative uncharacterized proteinAlignment
HAMAP No significant hit
InterPro
Database:interpro:18.0
IPR002755 DNA primase, small subunit (Family)
 [140-262]  2.9e-25 PF01896
PF01896   DNA_primase_S
SignalP No significant hit
TMHMM No significant hit
SOSUI No significant hit

close this sectionCalculated information (Amino acid sequence)

size of protein 342 amino acids
molecular mass 38,182.15 Da
pI 5.72
aa composition
AlaValLeuIlePheTrpProMetGlySer
9.4
(32aa)
7.6
(26aa)
9.1
(31aa)
4.1
(14aa)
2.6
(9aa)
1.8
(6aa)
8.2
(28aa)
1.5
(5aa)
7.3
(25aa)
4.1
(14aa)
ThrCysAsnGlnTyrLysHisArgAspGlu
5.3
(18aa)
0.6
(2aa)
2.3
(8aa)
1.8
(6aa)
2.9
(10aa)
4.1
(14aa)
2
(7aa)
9.6
(33aa)
9.6
(33aa)
6.1
(21aa)

open this sectionSequence

close this sectionCovered clones

NBRC No. clone name start stop length(bp)
G13-001-213 RO1FO01L80011D04 5,614,716 5,656,268 41,553

close this sectionDistribution of Our Microbial Genomic DNA clones

We have been distributing copies of the microbial genomic DNA clones constructed during the course of each of the genomic DNA sequencing projects.
You can find more detailed information at http://www.nbrc.nite.go.jp/e/mdna-e.html.