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CDS Information : ROP_60750

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close this sectionGenomic map

Display Clone

Rhodococcus opacus B4 (= NBRC 108011) chromosome

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Proteome 
Clone

close this sectionLocation

Organism Rhodococcus opacus B4 (= NBRC 108011)
Replicon chromosome
Start / Stop / Direction 6,641,138 / 6,642,523 / +
Location 6641138..6642523
Type CDS
Length 1,386 bp (461 aa)

close this sectionAnnotation

Product glutamate decarboxylase
Gene name
Functional category Metabolism
- Amino Acid Metabolism
EC number 4.1.1.15
Note
KEGG pathway map:00650 KO:K01580
map:00252 KO:K01580
map:00430 KO:K01580
map:00251 KO:K01580
map:00410 KO:K01580
Sequence feature
References Family/Domain:IPR010107
Uniprot:P69908 Pubmed:1522060

close this sectionComputational search results

BLASTP
Database:UniProtKB:14.0
1E=0Q0S3U3_RHOSRGlutamate decarboxylaseAlignment
2E=0A1QX13_MYCTFGlutamate decarboxylase gadBAlignment
3E=0A4KLW0_MYCTUGlutamate decarboxylase gadBAlignment
4E=0Q7TWI7_MYCBOProbable GLUTAMATE DECARBOXYLASE GADBAlignment
5E=0A5U8A8_MYCTAGlutamate decarboxylaseAlignment
HAMAP No significant hit
InterPro
Database:interpro:18.0
IPR002129 Pyridoxal-dependent decarboxylase (Family)
 [32-383]  8.5e-86 PF00282
PF00282   Pyridoxal_deC
 [45-431]  1.5e-189 PTHR11999
PTHR11999   GROUP II PYRIDOXAL-5-PHOSPHATE DECARBOXYLASE
IPR010107 Glutamate decarboxylase (Family)
 [15-447]  1.9e-295 TIGR01788
TIGR01788   Glu-decarb-GAD: glutamate decarboxylase
 [45-431]  1.5e-189 PTHR11999:SF1
PTHR11999:SF1   GLUTAMATE DECARBOXYLASE
IPR015421 Pyridoxal phosphate-dependent transferase, major region, subdomain 1 (Domain)
 [63-347]  2.1e-31 G3DSA:3.40.640.10
G3DSA:3.40.640.10   no description
IPR015424 Pyridoxal phosphate-dependent transferase, major region (Domain)
 [2-450]  3.9e-126 SSF53383
SSF53383   PLP-dependent transferases
SignalP No significant hit
TMHMM No significant hit
SOSUI No significant hit

close this sectionCalculated information (Amino acid sequence)

size of protein 461 amino acids
molecular mass 50,921.73 Da
pI 4.8
aa composition
AlaValLeuIlePheTrpProMetGlySer
10.2
(47aa)
9.5
(44aa)
8
(37aa)
4.1
(19aa)
4.6
(21aa)
1.5
(7aa)
5.9
(27aa)
2.8
(13aa)
8
(37aa)
4.6
(21aa)
ThrCysAsnGlnTyrLysHisArgAspGlu
6.3
(29aa)
0.9
(4aa)
2.2
(10aa)
1.5
(7aa)
3.3
(15aa)
2.6
(12aa)
3
(14aa)
6.7
(31aa)
6.9
(32aa)
7.4
(34aa)

open this sectionSequence

close this sectionCovered clones

NBRC No. clone name start stop length(bp)
G13-001-250 RO1FO01L80010H14 6,602,415 6,645,273 42,859
G13-001-251 RO1FO01L80009O17 6,623,733 6,664,644 40,912

close this sectionDistribution of Our Microbial Genomic DNA clones

We have been distributing copies of the microbial genomic DNA clones constructed during the course of each of the genomic DNA sequencing projects.
You can find more detailed information at http://www.nbrc.nite.go.jp/e/mdna-e.html.