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CDS Information : ROP_62400

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close this sectionGenomic map

Display Clone

Rhodococcus opacus B4 (= NBRC 108011) chromosome

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Genome
Proteome 
Clone

close this sectionLocation

Organism Rhodococcus opacus B4 (= NBRC 108011)
Replicon chromosome
Start / Stop / Direction 6,843,505 / 6,844,707 / +
Location 6843505..6844707
Type CDS
Length 1,203 bp (400 aa)

close this sectionAnnotation

Product alanine racemase
Gene name alr
Functional category Metabolism
- Amino Acid Metabolism
EC number 5.1.1.1
Note
KEGG pathway map:00252 KO:K01775
map:00473 KO:K01775
Sequence feature
References HAMAP:MF_01201

close this sectionProteome

Proteome results
strainR (2D-PAGE)
strainD (2D-PAGE)
strainO+OA (2D-PAGE)
strainO (1DE-LC)
strainR (1DE-LC)
strainD (1DE-LC)
strainO+OA (1DE-LC)
Show sequence

close this sectionComputational search results

BLASTP
Database:UniProtKB:14.0
1E=0Q0S3C9_RHOSRAlanine racemaseAlignment
2E=1e-141Q5Z1G7_NOCFAPutative alanine racemaseAlignment
3E=1e-124A4TEM3_MYCGIAlanine racemase precursorAlignment
4E=1e-124B2HD03_MYCMMAlanine racemase, AlrAlignment
5E=1e-124ALR_MYCS2Alanine racemaseAlignment
HAMAP
Database:HAMAP:20080521
 [25-395]  35.7 MF_01201
MF_01201   ALR
InterPro
Database:interpro:18.0
IPR000821 Alanine racemase region (Domain)
 [25-396]  4.4e-102 TIGR00492
TIGR00492   alr: alanine racemase
IPR001608 Alanine racemase, N-terminal (Domain)
 [27-255]  1.1e-78 PF01168
PF01168   Ala_racemase_N
IPR009006 Alanine racemase/group IV decarboxylase, C-terminal (Domain)
 [260-397]  1.7e-53 SSF50621
SSF50621   Alanine racemase C-terminal domain-like
 [259-394]  7.7e-41 G3DSA:2.40.37.10
G3DSA:2.40.37.10   no description
IPR011079 Alanine racemase, C-terminal (Domain)
 [266-395]  1.7e-56 PF00842
PF00842   Ala_racemase_C
SignalP No significant hit
TMHMM No significant hit
SOSUI No significant hit

close this sectionCalculated information (Amino acid sequence)

size of protein 400 amino acids
molecular mass 41,837.49 Da
pI 6.28
aa composition
AlaValLeuIlePheTrpProMetGlySer
16.5
(66aa)
11.8
(47aa)
9
(36aa)
3.3
(13aa)
1.8
(7aa)
1
(4aa)
5.5
(22aa)
1.8
(7aa)
10
(40aa)
4
(16aa)
ThrCysAsnGlnTyrLysHisArgAspGlu
5
(20aa)
0.3
(1aa)
1.5
(6aa)
2.5
(10aa)
1.5
(6aa)
1.5
(6aa)
3.5
(14aa)
8
(32aa)
7.3
(29aa)
4.5
(18aa)

open this sectionSequence

close this sectionCovered clones

NBRC No. clone name start stop length(bp)
G13-001-259 RO1FO01L80010B06 6,817,956 6,856,889 38,934

close this sectionDistribution of Our Microbial Genomic DNA clones

We have been distributing copies of the microbial genomic DNA clones constructed during the course of each of the genomic DNA sequencing projects.
You can find more detailed information at http://www.nbrc.nite.go.jp/e/mdna-e.html.