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CDS Information : ROP_68280

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close this sectionGenomic map

Display Clone

Rhodococcus opacus B4 (= NBRC 108011) chromosome

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Overview 
Genome
Proteome 
Clone

close this sectionLocation

Organism Rhodococcus opacus B4 (= NBRC 108011)
Replicon chromosome
Start / Stop / Direction 7,446,266 / 7,448,263 / +
Location 7446266..7448263
Type CDS
Length 1,998 bp (665 aa)

close this sectionAnnotation

Product 1-deoxy-D-xylulose-5-phosphate synthase
Gene name dxs
Functional category Metabolism
- Lipid Metabolism
EC number 2.2.1.7
Note
KEGG pathway map:00100 KO:K01662
Sequence feature
References HAMAP:MF_00315

close this sectionProteome

Proteome results
strainO (2D-PAGE)
strainR (2D-PAGE)
strainD (2D-PAGE)
strainO+OA (2D-PAGE)
strainO (1DE-LC)
strainR (1DE-LC)
strainD (1DE-LC)
strainO+OA (1DE-LC)
Show sequence

close this sectionComputational search results

BLASTP
Database:UniProtKB:14.0
1E=0DXS_RHOSR1-deoxy-D-xylulose-5-phosphate synthase
1-deoxyxylulose-5-phosphate synthase
DXP synthase
DXPS
Alignment
2E=0DXS_NOCFA1-deoxy-D-xylulose-5-phosphate synthase
1-deoxyxylulose-5-phosphate synthase
DXP synthase
DXPS
Alignment
3E=0DXS_MYCS21-deoxy-D-xylulose-5-phosphate synthase
1-deoxyxylulose-5-phosphate synthase
DXP synthase
DXPS
Alignment
4E=0B1MCU7_MYCABProbable 1-deoxy-d-xylulose-5-phosphate synthase
DXS
Alignment
5E=0DXS_MYCSK1-deoxy-D-xylulose-5-phosphate synthase
1-deoxyxylulose-5-phosphate synthase
DXP synthase
DXPS
Alignment
HAMAP
Database:HAMAP:20080521
 [19-638]  40.953 MF_00315
MF_00315   DXS
InterPro
Database:interpro:18.0
IPR005474 Transketolase, N-terminal (Domain)
 [45-64]  PS00801
PS00801   TRANSKETOLASE_1
IPR005475 Transketolase, central region (Domain)
 [330-496]  7.3e-52 PF02779
PF02779   Transket_pyr
 [438-454]  PS00802
PS00802   TRANSKETOLASE_2
IPR005476 Transketolase, C-terminal (Domain)
 [506-629]  3.5e-30 PF02780
PF02780   Transketolase_C
IPR005477 Deoxyxylulose-5-phosphate synthase (Family)
 [20-638]  8.1e-192 TIGR00204
TIGR00204   dxs: 1-deoxy-D-xylulose-5-phosphate synthas
IPR009014 Transketolase, C-terminal-like (Domain)
 [518-614]  3.5e-14 G3DSA:3.40.50.920
G3DSA:3.40.50.920   no description
 [518-637]  7.7e-27 SSF52922
SSF52922   TK C-terminal domain-like
IPR020826 Transketolase binding site (Binding_site)
 [438-454]  PS00802
PS00802   TRANSKETOLASE_2
SignalP No significant hit
TMHMM No significant hit
SOSUI No significant hit

close this sectionCalculated information (Amino acid sequence)

size of protein 665 amino acids
molecular mass 69,831.43 Da
pI 5.97
aa composition
AlaValLeuIlePheTrpProMetGlySer
14.3
(95aa)
9.6
(64aa)
10.4
(69aa)
3.8
(25aa)
2.4
(16aa)
1.1
(7aa)
4.5
(30aa)
2.3
(15aa)
10.5
(70aa)
5.4
(36aa)
ThrCysAsnGlnTyrLysHisArgAspGlu
4.7
(31aa)
0.6
(4aa)
2
(13aa)
3.6
(24aa)
1.5
(10aa)
3
(20aa)
3.2
(21aa)
5.9
(39aa)
7.2
(48aa)
4.2
(28aa)

open this sectionSequence

close this sectionCovered clones

NBRC No. clone name start stop length(bp)
G13-001-282 RO1FO01L80013D03 7,422,704 7,460,104 37,401
G13-001-283 RO1FO01L80004N09 7,443,490 7,484,479 40,990

close this sectionDistribution of Our Microbial Genomic DNA clones

We have been distributing copies of the microbial genomic DNA clones constructed during the course of each of the genomic DNA sequencing projects.
You can find more detailed information at http://www.nbrc.nite.go.jp/e/mdna-e.html.