CDS Information : ROP_68300

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Rhodococcus opacus B4 chromosome	Legend Jump
Overview  Genome Proteome  Clone

Center position		change
ID		change
Gene name		change

Organism	Rhodococcus opacus B4
Replicon	chromosome
Start / Stop / Direction	7,450,843 / 7,449,827 / -
Location	complement(7449827..7450843)
Type	CDS
Length	1,017 bp (338 aa)

Product	putative ABC transporter substrate-binding protein
Gene name
Functional category	Environmental Information and Cellular Processing - Membrane Transport (01310)
EC number
Note
KEGG pathway	KO:K02016
Sequence feature
References	Family/Domain:IPR002491

Proteome results	strainO (1DE-LC) strainR (1DE-LC) strainD (1DE-LC) strainO+OA (1DE-LC) Show sequence

BLASTP Database:UniProtKB:14.0 show BLAST table	1 E=1e-179 Q0S1G9_RHOSR ABC Fe(3+) transporter, substrate binding component Alignment 2 E=7e-72 A6WEY3_KINRD Periplasmic binding protein precursor Alignment 3 E=4e-66 Q0SEB0_RHOSR ABC Fe(3+) transporter, substrate binding component Alignment 4 E=1e-60 A4AFS4_9ACTN Iron ABC transporter, substrate binding protein Alignment 5 E=2e-60 Q6ADR1_LEIXX Iron ABC transporter, substrate binding protein Alignment
HAMAP	No significant hit
InterPro Database:interpro:18.0	IPR002491 ABC transporter periplasmic binding domain (Domain) PF01497   Peripla_BP_2 PS50983   FE_B12_PBP IPR002491 Periplasmic binding protein (Family) PS50983   FE_B12_PBP PF01497   Peripla_BP_2
SignalP	Bacteria, Gram-positive
TMHMM	No significant hit
SOSUI	No significant hit

size of protein	338 amino acids
molecular mass	34,977.14 Da
pI	3.99
aa composition	Ala Val Leu Ile Phe Trp Pro Met Gly Ser 16.6 (56aa) 9.2 (31aa) 8.3 (28aa) 3.3 (11aa) 3.6 (12aa) 1.5 (5aa) 5.9 (20aa) 1.2 (4aa) 7.4 (25aa) 6.5 (22aa) Thr Cys Asn Gln Tyr Lys His Arg Asp Glu 10.1 (34aa) 0.3 (1aa) 3 (10aa) 4.1 (14aa) 2.4 (8aa) 3.3 (11aa) 0.6 (2aa) 1.8 (6aa) 6.8 (23aa) 4.4 (15aa)

>ROP_68300 putative ABC transporter substrate-binding protein
GTGTTCGCACACACCGCCAGACGTCAGCTCGCCGTCGCACTCGCCGTGGCCAGTTCGTCC
CTCTTCCTCGCCGCATGCTCGTCCGGCGACGGCGGGAGCAGCACGGAGGCAACGGGTGAG
GGATTCCCCGTCACCATTGCGAACACGTTCGGATCCACCACCCTCGACGCGGCACCCGAA
CGCATCGTGACCCTCGGATGGAACGCCCAGGACGTCGTCTACGCCCTCGGCCAGACACCG
GTCGGCATGCCGAAATACACGTACGGCGCCGAGGCGAACGGTGTGATGCCGTGGCTGCAG
GACCGATTCGACCCGGCCGCGACCACGTTGCTCGACGCGGCCACGTCCACCCCGATCGAG
GGCGTCGCCGCCCTGGCGCCCGACGTGGTACTCGCCCCGTACGAGGGATTCGACGAGGCG
ACGTACGAGAAGCTGTCGGGAATCGCCCCCACCGTCGCGTACCCGGACAAGGCGTGGCAG
ACCACGTGGCAGGACCAGACCACGCTGGTCGGACAGGCACTCGGCAAGAGTGCCGAGGCC
GAGCAACTGGTGGCCGGTCTCGACGACACCCTCGCCCAGACCGCAGCCGCGCATCCCGAG
TTCGCAGGCAAGACGATCTCGGTCATCAACTTCGACACCGACGCCGCGACGGTCAACGTC
TACATGCCCTCCGATCCCCGCGTCCAGGTGCTGACGGAACTCGGCTTCACCGTGTCGCCC
GGCGTGCAGAAGCTGGCCGCCTCGAACGACCCCGACAAATTCTTCGCCGACATCTCCGTG
GAGAACATCTCCGACGTGGACGCCGATGTGGTGGTCGCGTTCGTCCCGGAGAACACCACC
GTCGCCGCGAACCCGGCCTACGCGAATCTCGGTGCCATCGGCCGCGGTACCGCGGTCGCA
CTGTCGGACACGAAGATCATCTCCGGGCTCAGCCAGACCAGCGTCCTCGCGACACCGTGG
GTTCTGGACAAGCTGACGCCTCAGCTCAGCGAGGCCGCGAAGAAAGCGGGTGCCTGA


>ROP_68300 putative ABC transporter substrate-binding protein
MFAHTARRQLAVALAVASSSLFLAACSSGDGGSSTEATGEGFPVTIANTFGSTTLDAAPE
RIVTLGWNAQDVVYALGQTPVGMPKYTYGAEANGVMPWLQDRFDPAATTLLDAATSTPIE
GVAALAPDVVLAPYEGFDEATYEKLSGIAPTVAYPDKAWQTTWQDQTTLVGQALGKSAEA
EQLVAGLDDTLAQTAAAHPEFAGKTISVINFDTDAATVNVYMPSDPRVQVLTELGFTVSP
GVQKLAASNDPDKFFADISVENISDVDADVVVAFVPENTTVAANPAYANLGAIGRGTAVA
LSDTKIISGLSQTSVLATPWVLDKLTPQLSEAAKKAGA

NBRC No.	clone name	start	stop	length(bp)
G13-001-282	RO1FO01L80013D03	7,422,704	7,460,104	37,401
G13-001-283	RO1FO01L80004N09	7,443,490	7,484,479	40,990

We have been distributing copies of the microbial genomic DNA clones constructed during the course of each of the genomic DNA sequencing projects.
You can find more detailed information at http://www.nbrc.nite.go.jp/e/mdna-e.html.