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CDS Information : ROP_68560

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close this sectionGenomic map

Display Clone

Rhodococcus opacus B4 chromosome

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Overview 
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Proteome 
Clone

close this sectionLocation

Organism Rhodococcus opacus B4
Replicon chromosome
Start / Stop / Direction 7,481,183 / 7,481,608 / +
Location 7481183..7481608
Type CDS
Length 426 bp (141 aa)

close this sectionAnnotation

Product hypothetical membrane protein
Gene name
Functional category Unclassified
- hypothetical protein
EC number
Note
KEGG pathway
Sequence feature
References

close this sectionComputational search results

BLASTP
Database:UniProtKB:14.0
1E=7e-75Q0S1E3_RHOSRPutative uncharacterized proteinAlignment
2E=9e-43Q5YTC9_NOCFAPutative uncharacterized proteinAlignment
3E=3e-41A4TD01_MYCGIPutative uncharacterized proteinAlignment
4E=7e-40A1T867_MYCVPPutative uncharacterized proteinAlignment
5E=5e-39A1UF78_MYCSKPutative uncharacterized proteinAlignment
HAMAP No significant hit
InterPro
Database:interpro:18.0
IPR013434 Conserved hypothetical protein CHP02611 (Family)
 [12-130]  5.6e-30 TIGR02611
TIGR02611   TIGR02611: conserved hypothetical protein T
SignalP No significant hit
TMHMM
 [30-52]  Transmembrane (i-o) [57-79]  Transmembrane (o-i) [99-121]  Transmembrane (i-o)
Transmembrane 3   
SOSUI
 [25-47]  Transmembrane [54-76]  Transmembrane [103-125]  Transmembrane
Transmembrane 3   

close this sectionCalculated information (Amino acid sequence)

size of protein 141 amino acids
molecular mass 15,637.30 Da
pI 9.07
aa composition
AlaValLeuIlePheTrpProMetGlySer
12.8
(18aa)
8.5
(12aa)
14.9
(21aa)
5
(7aa)
4.3
(6aa)
5.7
(8aa)
5
(7aa)
1.4
(2aa)
9.9
(14aa)
5
(7aa)
ThrCysAsnGlnTyrLysHisArgAspGlu
2.8
(4aa)
0.7
(1aa)
0.7
(1aa)
2.1
(3aa)
3.5
(5aa)
1.4
(2aa)
2.1
(3aa)
7.1
(10aa)
4.3
(6aa)
2.8
(4aa)

open this sectionSequence

close this sectionCovered clones

NBRC No. clone name start stop length(bp)
G13-001-283 RO1FO01L80004N09 7,443,490 7,484,479 40,990
G13-001-284 RO1FO01L80016F22 7,473,187 7,512,931 39,745

close this sectionDistribution of Our Microbial Genomic DNA clones

We have been distributing copies of the microbial genomic DNA clones constructed during the course of each of the genomic DNA sequencing projects.
You can find more detailed information at http://www.nbrc.nite.go.jp/e/mdna-e.html.