small fontnormal fontlarge fontmail to

CDS Information : ROP_69620

close allopen/close all

close this sectionGenomic map

Display Clone

Rhodococcus opacus B4 (= NBRC 108011) chromosome

Legend Jump
Overview 
Genome
Proteome 
Clone

close this sectionLocation

Organism Rhodococcus opacus B4 (= NBRC 108011)
Replicon chromosome
Start / Stop / Direction 7,591,315 / 7,594,071 / +
Location 7591315..7594071
Type CDS
Length 2,757 bp (918 aa)

close this sectionAnnotation

Product phosphoenolpyruvate carboxylase
Gene name ppc
Functional category Metabolism
- Carbohydrate Metabolism
EC number 4.1.1.31
Note
KEGG pathway map:00620 KO:K01595
map:00720 KO:K01595
map:00710 KO:K01595
Sequence feature
References HAMAP:MF_00595

close this sectionProteome

Proteome results
strainO (1DE-LC)
strainR (1DE-LC)
strainD (1DE-LC)
strainO+OA (1DE-LC)
Show sequence

close this sectionComputational search results

BLASTP
Database:UniProtKB:14.0
1E=0Q0S0J1_RHOSRPhosphoenolpyruvate carboxylaseAlignment
2E=0A3PZA5_MYCSJPhosphoenolpyruvate carboxylaseAlignment
3E=0A1UFP3_MYCSKPhosphoenolpyruvate carboxylaseAlignment
4E=0Q1B9B8_MYCSSPhosphoenolpyruvate carboxylaseAlignment
5E=0CAPP_MYCS2Phosphoenolpyruvate carboxylase
PEPCase
PEPC
Alignment
HAMAP
Database:HAMAP:20080521
 [8-918]  19.439 MF_00595
MF_00595   CAPP
InterPro
Database:interpro:18.0
IPR001449 Phosphoenolpyruvate carboxylase (Family)
 [1-918]  9.4e-109 PF00311
PF00311   PEPcase
 [571-583]  PS00393
PS00393   PEPCASE_2
 [141-152]  PS00781
PS00781   PEPCASE_1
IPR015813 Pyruvate/Phosphoenolpyruvate kinase, catalytic core (Domain)
 [162-679]  3.4e-129 G3DSA:3.20.20.60
G3DSA:3.20.20.60   no description
 [13-918]  4e-298 SSF51621
SSF51621   Phosphoenolpyruvate/pyruvate domain
IPR018129 Phosphoenolpyruvate carboxylase, active site (Active_site)
 [141-152]  PS00781
PS00781   PEPCASE_1
 [571-583]  PS00393
PS00393   PEPCASE_2
IPR021135 Phosphoenolpyruvate carboxylase, C-terminal region (Region)
 [1-918]  9.4e-109 PF00311
PF00311   PEPcase
SignalP No significant hit
TMHMM No significant hit
SOSUI No significant hit

close this sectionCalculated information (Amino acid sequence)

size of protein 918 amino acids
molecular mass 100,827.82 Da
pI 4.79
aa composition
AlaValLeuIlePheTrpProMetGlySer
12.3
(113aa)
6.8
(62aa)
12.1
(111aa)
4.1
(38aa)
2.4
(22aa)
1.1
(10aa)
4.6
(42aa)
1.7
(16aa)
7.4
(68aa)
5.6
(51aa)
ThrCysAsnGlnTyrLysHisArgAspGlu
6.5
(60aa)
0.2
(2aa)
2
(18aa)
2.6
(24aa)
2.5
(23aa)
1.3
(12aa)
1.9
(17aa)
9.8
(90aa)
6.6
(61aa)
8.5
(78aa)

open this sectionSequence

close this sectionCovered clones

NBRC No. clone name start stop length(bp)
G13-001-287 RO1FO01L80011L12 7,559,379 7,600,855 41,477
G13-001-288 RO1FO01L80010E15 7,590,173 7,629,376 39,204

close this sectionDistribution of Our Microbial Genomic DNA clones

We have been distributing copies of the microbial genomic DNA clones constructed during the course of each of the genomic DNA sequencing projects.
You can find more detailed information at http://www.nbrc.nite.go.jp/e/mdna-e.html.