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CDS Information : SA0119

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Staphylococcus aureus N315 chromosome

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Overview 
Genome

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Organism Staphylococcus aureus N315
Replicon chromosome
Start / Stop / Direction 138,019 / 139,221 / +
Location 138019..139221
Type CDS
Length 1,203 bp (400 aa)

close this sectionAnnotation

Product putative diaminopimelate decarboxylase
Gene name sbnH
Functional category Intermediary metabolism
- Metabolism of amino acids and related molecules
EC number
Note
KEGG pathway
Sequence feature
References

close this sectionComparative genome

Table
Display BBH1e-1001e-501e-101e-3
Staphylococcus epidermidis ATCC 12228Staphylococcus epidermidis RP62A

close this sectionRelated links to external database

UniProtQ7A862
INSDBAB41338.1 (DDBJ GenBank EMBL)
RefSeqNP_373360.1
GI15925827
GeneID1122893
UniParcUPI00000CABF6

close this sectionComputational search results

BLASTP
Database:UniProtKB:2010_04
1E=0Q99X92_STAAMProbable diaminopimelate decarboxylase proteinAlignment
2E=0Q7A862_STAANPutative diaminopimelate decarboxylaseAlignment
3E=0D0K7A6_STAADPyridoxal-dependent decarboxylaseAlignment
4E=0A7WX79_STAA1Putative uncharacterized proteinAlignment
5E=0A6TXQ8_STAA2Orn/DAP/Arg decarboxylase 2Alignment
HAMAP No significant hit
InterPro
Database:interpro:25.0
IPR000183 Orn/DAP/Arg decarboxylase 2 (Domain)
 [278-392]  9.5e-13 PF00278
PF00278   Orn_DAP_Arg_deC
 [47-65]  2.2e-09 PR01179 [67-79]  2.2e-09 PR01179 [178-191]  2.2e-09 PR01179 [263-282]  2.2e-09 PR01179
PR01179   ODADCRBXLASE
 [30-274]  1.6e-36 PF02784
PF02784   Orn_Arg_deC_N
IPR002345 Lipocalin (Conserved_site)
 [284-295]  PS00213
PS00213   LIPOCALIN
IPR002345 Lipocalin (Domain)
 [284-295]  PS00213
PS00213   LIPOCALIN
IPR002345 Lipocalin (Family)
 [284-295]  PS00213
PS00213   LIPOCALIN
IPR002433 Ornithine decarboxylase (Domain)
 [45-72]  8.6e-09 PR01182 [88-112]  8.6e-09 PR01182 [358-371]  8.6e-09 PR01182
PR01182   ORNDCRBXLASE
IPR002433 Ornithine decarboxylase (Family)
 [45-72]  8.6e-09 PR01182 [88-112]  8.6e-09 PR01182 [358-371]  8.6e-09 PR01182
PR01182   ORNDCRBXLASE
IPR009006 Alanine racemase/group IV decarboxylase, C-terminal (Domain)
 [245-393]  2.1e-31 SSF50621
SSF50621   Alanine racemase C-terminal domain-like
SignalP No significant hit
TMHMM No significant hit
SOSUI No significant hit

close this sectionCalculated information (Amino acid sequence)

size of protein 400 amino acids
molecular mass 45,707.71 Da
pI 6.07
aa composition
AlaValLeuIlePheTrpProMetGlySer
5.8
(23aa)		7.8
(31aa)		8
(32aa)		7.5
(30aa)		5.3
(21aa)		1.3
(5aa)		4
(16aa)		1.8
(7aa)		6.3
(25aa)		6
(24aa)
ThrCysAsnGlnTyrLysHisArgAspGlu
4.5
(18aa)		1
(4aa)		4.3
(17aa)		5
(20aa)		4.3
(17aa)		5
(20aa)		6
(24aa)		3.5
(14aa)		5.5
(22aa)		7.5
(30aa)

open this sectionSequence