DOGAN: CDS Information : SA0678

Display

Staphylococcus aureus N315 chromosome

Overview
Genome

Center position		change
ID		change
Gene name		change

Genome	Display	Sync
chromosome

Organism	Staphylococcus aureus N315
Replicon	chromosome
Start / Stop / Direction	773,318 / 774,832 / +
Location	773318..774832
Type	CDS
Length	1,515 bp (504 aa)

Product	hypothetical protein, similar to choline transporter
Gene name
Functional category	Cell envelope and cellular processes - Transport / binding proteins and lipoproteins
EC number
Note
KEGG pathway
Sequence feature
References

Table

Display	BBH1e-1001e-501e-101e-3

Staphylococcus epidermidis ATCC 12228	Staphylococcus epidermidis RP62A
[503] SE0503 0(741) choline transporter [224] SE0224 5e-43(168) glycine betaine/carnitine/choline ABC transporter (osmoprotec) opuCC [2016] SE2016 4e-40(158) glycine betaine/carnitine/choline ABC transporter (osmoprotec) opuCC [223] SE0223 4e-38(152) opuCB protein [2017] SE2017 5e-37(148) opuCB protein [225] SE0225 1e-26(113) opuCD protein [2015] SE2015 2e-20(93.2) opuCD protein [2321] SE2321 5e-09(55.5) ABC transporter permease protein [2254] SE2254 1e-08(54.3) phosphonates transport permease	[379] SERP0386 0(741) ABC transporter, permease protein [2302] SERP2356 5e-43(168) amino acid ABC transporter, amino acid-binding protein [1983] SERP2029 1e-40(160) amino acid ABC transporter, amino acid-binding protein [2303] SERP2357 2e-38(152) amino acid ABC transporter, permease protein [1984] SERP2030 5e-37(148) amino acid ABC transporter, permease protein [2301] SERP2355 1e-26(113) amino acid ABC transporter, permease protein [1982] SERP2028 2e-20(93.6) amino acid ABC transporter, permease protein [94] SERP0098 6e-10(58.2) ABC transporter, permease protein [2232] SERP2284 8e-09(54.7) phosphonate ABC transporter, permease protein

Staphylococcus epidermidis ATCC 12228

Staphylococcus epidermidis RP62A

[503] SE0503 0(741)
choline transporter

[379] SERP0386 0(741)
ABC transporter, permease protein

UniProt	Q7A6T7
INSD	BAB41911.1 (DDBJ GenBank EMBL)
RefSeq	NP_373933.1
GI	15926400
GeneID	1123485
UniParc	UPI00000547A2

BLASTP
Database:UniProtKB:2010_04

show BLAST table

1	E=0	Q99VQ0_STAAM	Choline transporter	Alignment
2	E=0	Q7A6T7_STAAN	SA0678 protein	Alignment
3	E=0	Q7A1I1_STAAW	MW0685 protein	Alignment
4	E=0	Q6GBA7_STAAS	ABC transporter permease protein	Alignment
5	E=0	Q5HHV0_STAAC	Osmoprotectant ABC transporter, permease protein	Alignment

HAMAP

No significant hit

InterPro
Database:interpro:25.0

IPR000515 Binding-protein-dependent transport systems inner membrane component (Family)
	PS50928 ABC_TM1
	PF00528 BPD_transp_1
IPR007210 Substrate-binding region of ABC-type glycine betaine transport system (Domain)
	PF04069 OpuAC

SignalP

No significant hit

TMHMM

Transmembrane 6

SOSUI

Transmembrane 5

size of protein

504 amino acids

molecular mass

56,057.79 Da

pI

9.95

aa composition

Ala	Val	Leu	Ile	Phe	Trp	Pro	Met	Gly	Ser
8.5 (43aa)	5 (25aa)	13.1 (66aa)	10.7 (54aa)	3.6 (18aa)	0 (0aa)	4.6 (23aa)	4.4 (22aa)	6.2 (31aa)	3.2 (16aa)
Thr	Cys	Asn	Gln	Tyr	Lys	His	Arg	Asp	Glu
6 (30aa)	0 (0aa)	4.6 (23aa)	2.8 (14aa)	3.6 (18aa)	10.5 (53aa)	0.8 (4aa)	2.6 (13aa)	5 (25aa)	5.2 (26aa)

>SA0678 hypothetical protein, similar to choline transporter
ATGACTAACTTTTTCGACATATTGAGTGAACGTAAGGGGCAACTCTTTTCGACAATGATA
GAACATATTCAAATATCATTTATTGCATTATTGATTGCAACTGCTATTGCGGTACCATTA
GGTATTTTATTAACGAAGACTAAAACGATATCTGAAATCGTAATGAATATTGCGGCAATT
CTTCAAACCATACCATCGTTGGCATTATTAGGTTTAATGATTCCTTTATTTGGTATCGGT
CGTGTGCCAGCAATTATTGCACTTGTAGTGTATGCGTTGTTACCAATTTTAAGGAATACG
TATACTGGAATTAAAGAAGTTGATCCATCACTCATTGAAGCGGCTAAAGGTATAGGTATG
AAACCATTTAGACGTTTAACTAAAGTCGAACTTCCGATAGCAATGCCTGTTATAATGGCT
GGTGTAAGAACGGCTATGGTATTAATTATAGGTACAGCGACACTAGCAGCATTAATTGGT
GCAGGCGGACTAGGAGATTTAATTTTATTAGGTATAGACCGTAACAATGCGTCATTGATA
TTATTAGGTGCAATTCCAGCAGCCTTATTGGCAATTATATTTGATTTAATTTTAAGATTT
ATGGCTAAATTATCTTATAAAAAGTTATTGATGACGTTAGGTGTTATAGTGATGATTATT
ATACTGGCCATCGCTATTCCTATGTTTGCACAAAAAGGTGATAAAATTACGTTAGCTGGA
AAGCTTGGCTCCGAGCCTTCGATTATTACAAATATGTATAAAATTTTAATAGAAGAAGAG
ACCAAAAATACTGTAGAAGTGAAAGATGGTATGGGGAAAACAGCATTTTTATTTAATGCT
TTAAAATCTGATGATATAGATGGGTATTTAGAGTTTACTGGAACAGTTTTAGGTGAATTA
ACAAAAGAACCATTGAAGTCAAAAGAAGAGAAAAAAGTTTATGAACAAGCTAAGCAAAGT
CTTGAAAAGAAATATCAAATGACTATGTTAAAACCAATGAAGTATAACAATACGTATGCT
TTAGCTGTAAAACGTGATTTTGCTAAACAACATAATATACGTACAATTGGTGATTTAAAT
AAGGTTAAAGATCAACTTAAACCAGGATTTACATTGGAATTTAATGATCGTCCAGATGGT
TACAAAGCTGTTCAAAAGGCTTATAATTTAAATTTAGATAACATACGTACAATGGAACCT
AAGTTGAGATATCAAGCGATCAATAAAGGTAATATTAATTTAATAGATGCATATTCAACT
GACGCTGAATTAAAACAATATGATATGGTTGTGTTAAAAGATGATAAGCACGTATTTCCA
CCATATCAAGGAGCACCATTATTTAAAGAAAGCTTTTTAAAGAAACATCCAGAAATTAAG
AAACCGTTAAACAAACTAGAAAACAAAATATCTGATGAAGATATGCAAATGATGAACTAT
AAAGTAACAGTTAAAAATGAAGACCCATATACAGTTGCGAAAGATTATTTAAAAGCAAAA
GGGTTAATCAAATAA


>SA0678 hypothetical protein, similar to choline transporter
MTNFFDILSERKGQLFSTMIEHIQISFIALLIATAIAVPLGILLTKTKTISEIVMNIAAI
LQTIPSLALLGLMIPLFGIGRVPAIIALVVYALLPILRNTYTGIKEVDPSLIEAAKGIGM
KPFRRLTKVELPIAMPVIMAGVRTAMVLIIGTATLAALIGAGGLGDLILLGIDRNNASLI
LLGAIPAALLAIIFDLILRFMAKLSYKKLLMTLGVIVMIIILAIAIPMFAQKGDKITLAG
KLGSEPSIITNMYKILIEEETKNTVEVKDGMGKTAFLFNALKSDDIDGYLEFTGTVLGEL
TKEPLKSKEEKKVYEQAKQSLEKKYQMTMLKPMKYNNTYALAVKRDFAKQHNIRTIGDLN
KVKDQLKPGFTLEFNDRPDGYKAVQKAYNLNLDNIRTMEPKLRYQAINKGNINLIDAYST
DAELKQYDMVVLKDDKHVFPPYQGAPLFKESFLKKHPEIKKPLNKLENKISDEDMQMMNY
KVTVKNEDPYTVAKDYLKAKGLIK

CDS Information : SA0678

Genomic map

Staphylococcus aureus N315 chromosome

Location

Annotation

Comparative genome

Related links to external database

Computational search results

Calculated information (Amino acid sequence)

Sequence