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CDS Information : SA0926

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Staphylococcus aureus N315 chromosome

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Overview 
Genome

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Organism Staphylococcus aureus N315
Replicon chromosome
Start / Stop / Direction 1,051,699 / 1,052,838 / +
Location 1051699..1052838
Type CDS
Length 1,140 bp (379 aa)

close this sectionAnnotation

Product phosphoribosylamine--glycine ligase PurD
Gene name purD
Functional category Intermediary metabolism
- Metabolism of nucleotides and nucleic acids
EC number
Note
KEGG pathway
Sequence feature
References

close this sectionComparative genome

Table
Display BBH1e-1001e-501e-101e-3
Staphylococcus epidermidis ATCC 12228Staphylococcus epidermidis RP62A
[772] SE0772 2e-160(557)
phosphoribosylamine--glycine ligase
[642] SERP0659 1e-160(558)
phosphoribosylamine--glycine ligase (EC:6.3.4.13)(purD)

close this sectionRelated links to external database

UniProtP65896 : N-term changed (-108)
INSDBAB42171.1 (DDBJ GenBank EMBL)
RefSeqNP_374193.1
GI15926660
GeneID1123749
UniParcUPI000019B3DC : N-term changed (-108)

close this sectionComputational search results

BLASTP
Database:UniProtKB:2010_04
1E=0D0K3Y9_STAADPhosphoribosylamine--glycine ligaseAlignment
2E=0A6U0P2_STAA2Phosphoribosylamine--glycine ligaseAlignment
3E=0A5IRW1_STAA9Phosphoribosylamine--glycine ligaseAlignment
4E=0D1R0N5_STAAUPhosphoribosylamine-glycine ligaseAlignment
5E=0D1QGV4_STAAUPhosphoribosylamine-glycine ligaseAlignment
HAMAP No significant hit
InterPro
Database:interpro:25.0
IPR000115 Phosphoribosylglycinamide synthetase (Domain)
 [249-256]  PS00184
PS00184   GARS
 [66-255]  5.69999999999998e-64 PF01071
PF01071   GARS_A
 [8-65]  6.40000000000001e-15 PF02844
PF02844   GARS_N
 [1-377]  1e-125 TIGR00877
TIGR00877   purD
 [288-376]  2.1e-20 PF02843
PF02843   GARS_C
IPR000115 Phosphoribosylglycinamide synthetase (Family)
 [1-377]  1e-125 TIGR00877
TIGR00877   purD
IPR011054 Rudiment single hybrid motif (Domain)
 [285-378]  8.1e-23 SSF51246
SSF51246   Rudmnt_hyb_motif
IPR011761 ATP-grasp fold (Domain)
 [72-275]  PS50975
PS50975   ATP_GRASP
IPR013815 ATP-grasp fold, subdomain 1 (Domain)
 [84-149]  2.3e-14 G3DSA:3.30.1490.20
G3DSA:3.30.1490.20   ATP_grasp_subdomain_1
IPR013816 ATP-grasp fold, subdomain 2 (Domain)
 [150-288]  8.1e-46 G3DSA:3.30.470.20
G3DSA:3.30.470.20   ATP_grasp_subdomain_2
IPR013817 Pre-ATP-grasp fold (Domain)
 [8-58]  4.6e-11 G3DSA:3.40.50.20
G3DSA:3.40.50.20   Pre-ATP_grasp
IPR016185 PreATP-grasp-like fold (Domain)
 [8-66]  1.2e-16 SSF52440
SSF52440   PreATP-grasp-like
IPR020559 Phosphoribosylglycinamide synthetase, conserved site (Conserved_site)
 [249-256]  PS00184
PS00184   GARS
SignalP No significant hit
TMHMM No significant hit
SOSUI No significant hit

close this sectionCalculated information (Amino acid sequence)

size of protein 379 amino acids
molecular mass 41,972.64 Da
pI 4.75
aa composition
AlaValLeuIlePheTrpProMetGlySer
8.4
(32aa)		7.1
(27aa)		7.1
(27aa)		7.7
(29aa)		5
(19aa)		0.5
(2aa)		3.7
(14aa)		2.4
(9aa)		8.7
(33aa)		4
(15aa)
ThrCysAsnGlnTyrLysHisArgAspGlu
4
(15aa)		0.8
(3aa)		4.2
(16aa)		4.5
(17aa)		3.2
(12aa)		8.2
(31aa)		2.4
(9aa)		2.6
(10aa)		7.7
(29aa)		7.9
(30aa)

open this sectionSequence