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CDS Information : SA0952

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Staphylococcus aureus N315 chromosome

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Overview 
Genome

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Organism Staphylococcus aureus N315
Replicon chromosome
Start / Stop / Direction 1,078,757 / 1,079,566 / +
Location 1078757..1079566
Type CDS
Length 810 bp (269 aa)

close this sectionAnnotation

Product spermidine/putrescine ABC transporter homolog
Gene name potC
Functional category Cell envelope and cellular processes
- Transport / binding proteins and lipoproteins
EC number
Note
KEGG pathway
Sequence feature
References

close this sectionComparative genome

Table
Display BBH1e-1001e-501e-101e-3
Staphylococcus epidermidis ATCC 12228Staphylococcus epidermidis RP62A
[799] SE0799 6e-105(372)
PotC protein
[670] SERP0688 7e-106(375)
spermidine/putrescine ABC transporter, permease protein PotC(potC)

close this sectionRelated links to external database

UniProtQ7A677
INSDBAB42198.1 (DDBJ GenBank EMBL)
RefSeqNP_374219.1
GI15926686
GeneID1123776
UniParcUPI00000D7872

close this sectionComputational search results

BLASTP
Database:UniProtKB:2010_04
1E=1e-150C5QI60_STAAUSpermidine/putrescine ABC superfamily ATP binding cassette transporterAlignment
2E=1e-150C5Q110_STAAUSpermidine/putrescine ABC superfamily ATP binding cassette transporterAlignment
3E=1e-150C5N4I5_STAA3Spermidine/putrescine ABC superfamily ATP binding cassette transporterAlignment
4E=1e-150C2K9E6_STAAUSpermidine/putrescine ABC superfamily ATP binding cassette transporterAlignment
5E=1e-150Q99V01_STAAMSpermidine/putrescine ABC transporter homologAlignment
HAMAP No significant hit
InterPro
Database:interpro:25.0
IPR000515 Binding-protein-dependent transport systems inner membrane component (Family)
 [77-261]  6.2e-18 PF00528
PF00528   BPD_transp_1
 [58-254]  21.84 PS50928
PS50928   ABC_TM1
SignalP No significant hit
TMHMM 
 [7-29]  Transmembrane (i-o) [62-84]  Transmembrane (o-i) [97-119]  Transmembrane (i-o) [129-151]  Transmembrane (o-i) [175-197]  Transmembrane (i-o) [236-258]  Transmembrane (o-i)
Transmembrane 6   
SOSUI 
 [7-29]  Transmembrane [59-81]  Transmembrane [96-118]  Transmembrane [131-153]  Transmembrane [176-198]  Transmembrane [203-225]  Transmembrane [235-257]  Transmembrane
Transmembrane 7   

close this sectionCalculated information (Amino acid sequence)

size of protein 269 amino acids
molecular mass 30,002.87 Da
pI 9.34
aa composition
AlaValLeuIlePheTrpProMetGlySer
6.7
(18aa)		7.8
(21aa)		13
(35aa)		13
(35aa)		8.2
(22aa)		0.7
(2aa)		2.2
(6aa)		4.1
(11aa)		7.1
(19aa)		6.7
(18aa)
ThrCysAsnGlnTyrLysHisArgAspGlu
5.6
(15aa)		0.4
(1aa)		5.9
(16aa)		1.9
(5aa)		4.8
(13aa)		4.1
(11aa)		2.2
(6aa)		1.5
(4aa)		1.9
(5aa)		2.2
(6aa)

open this sectionSequence