small fontnormal fontlarge fontmail to

CDS Information : SH0008

close allopen/close all

close this sectionGenomic map

Display

Staphylococcus haemolyticus JCSC1435 chromosome

 Legend Jump
Overview 
Genome

close this sectionLocation

Organism Staphylococcus haemolyticus JCSC1435
Replicon chromosome
Start / Stop / Direction 11,331 / 12,617 / +
Location 11331..12617
Type CDS
Length 1,287 bp (428 aa)

close this sectionAnnotation

Product seryl-tRNA synthetase (Serine-tRNA ligase)
Gene name serS
Functional category Information pathways
- Protein synthesis
EC number
Note
KEGG pathway
Sequence feature
References

close this sectionComparative genome

Table
Display BBH1e-1001e-501e-101e-3
Staphylococcus epidermidis ATCC 12228Staphylococcus epidermidis RP62A
[7] SE0007 0(806)
seryl-tRNA synthetase (EC:6.1.1.11)
[2484] SERP2545 0(806)
seryl-tRNA synthetase (EC:6.1.1.11)(serS)

close this sectionRelated links to external database

UniProtQ4LAK8
INSDBAE03317.1 (DDBJ GenBank EMBL)
RefSeqYP_251923.1
GI70725009
UniParcUPI000054B5A5

close this sectionComputational search results

BLASTP
Database:UniProtKB:2010_04
1E=0SYS_STAHJSeryl-tRNA synthetase
Seryl-tRNA(Ser/Sec) synthetase
Serine--tRNA ligase		Alignment
2E=0C2LZZ3_STAHOSerine--tRNA ligaseAlignment
3E=0B9CSF0_STACPSeryl-tRNA synthetaseAlignment
4E=0C5QP80_STAEPSeryl-tRNA synthetaseAlignment
5E=0C5QAM8_STAEPSeryl-tRNA synthetaseAlignment
HAMAP No significant hit
InterPro
Database:interpro:25.0
IPR002314 Aminoacyl-tRNA synthetase, class II (G, H, P and S) (Domain)
 [173-344]  7.79999999999999e-33 PF00587
PF00587   tRNA-synt_2b
IPR002317 Seryl-tRNA synthetase, class IIa (Family)
 [1-417]  TIGR00414
TIGR00414   serS
 [264-276]  4.79998722798115e-34 PR00981 [276-289]  4.79998722798115e-34 PR00981 [316-329]  4.79998722798115e-34 PR00981 [333-349]  4.79998722798115e-34 PR00981 [351-367]  4.79998722798115e-34 PR00981
PR00981   TRNASYNTHSER
 [1-107]  9.5e-29 PF02403
PF02403   Seryl_tRNA_N
 [1-427]  PIRSF001529
PIRSF001529   Ser-tRNA-synth_IIa
IPR006195 Aminoacyl-tRNA synthetase, class II (Domain)
 [173-410]  PS50862
PS50862   AA_TRNA_LIGASE_II
IPR010978 tRNA-binding arm (Domain)
 [1-113]  7e-30 SSF46589
SSF46589   tRNA_binding_arm
IPR015866 Seryl-tRNA synthetase, class IIa, N-terminal (Domain)
 [1-107]  9.5e-29 PF02403
PF02403   Seryl_tRNA_N
 [1-105]  6.19998763506012e-23 G3DSA:1.10.287.40
G3DSA:1.10.287.40   Ser-tRNA-synth_IIa_N
IPR018156 Seryl-tRNA synthetase, class IIa, C-terminal (Domain)
 [264-276]  4.79998722798115e-34 PR00981 [276-289]  4.79998722798115e-34 PR00981 [316-329]  4.79998722798115e-34 PR00981 [333-349]  4.79998722798115e-34 PR00981 [351-367]  4.79998722798115e-34 PR00981
PR00981   TRNASYNTHSER
SignalP No significant hit
TMHMM No significant hit
SOSUI No significant hit

close this sectionCalculated information (Amino acid sequence)

size of protein 428 amino acids
molecular mass 48,739.09 Da
pI 4.61
aa composition
AlaValLeuIlePheTrpProMetGlySer
7.7
(33aa)		5.8
(25aa)		8.4
(36aa)		5.8
(25aa)		4
(17aa)		0.9
(4aa)		4.2
(18aa)		2.8
(12aa)		5.6
(24aa)		3.7
(16aa)
ThrCysAsnGlnTyrLysHisArgAspGlu
5.8
(25aa)		0.9
(4aa)		4.7
(20aa)		2.8
(12aa)		2.3
(10aa)		7.5
(32aa)		1.2
(5aa)		6.5
(28aa)		7.9
(34aa)		11.2
(48aa)

open this sectionSequence