DOGAN: CDS Information : SH0018

Display

Staphylococcus haemolyticus JCSC1435 chromosome

Overview
Genome

Center position		change
ID		change
Gene name		change

Genome	Display	Sync
chromosome

Organism	Staphylococcus haemolyticus JCSC1435
Replicon	chromosome
Start / Stop / Direction	23,890 / 25,716 / +
Location	23890..25716
Type	CDS
Length	1,827 bp (608 aa)

Product	signal transduction two-component sensor histidine kinase, VicK
Gene name	vicK
Functional category	Cell envelope and cellular processes - Sensors (signal transduction)
EC number
Note
KEGG pathway
Sequence feature
References

Table

Display	BBH1e-1001e-501e-101e-3

Staphylococcus epidermidis ATCC 12228	Staphylococcus epidermidis RP62A
[19] SE0019 0(1032) two-component sensor histidine kinase [1175] SE1175 9e-54(204) respiratory response protein SrrB [1368] SE1368 2e-46(179) alkaline phosphatase synthesis sensor protein [1099] SE1099 4e-28(119) putative protein histidine kinase ArlS [478] SE0478 5e-20(92) histidine protein kinase [1942] SE1942 6e-16(78.6) two component histidine kinase sensor [2194] SE2194 7e-10(58.2) putative two-component sensor histidine kinase [428] SE0428 3e-08(53.1) putative two-component sensor histidine kinase	[2472] SERP2533 0(1032) sensory box histidine kinase YycG(yycG) [1029] SERP1054 9e-54(204) sensor histidine kinase SrrB(srrB) [1226] SERP1255 1e-46(180) sensory box histidine kinase PhoR(phoR) [964] SERP0988 5e-28(118) sensor histidine kinase ArlS(arlS) [359] SERP0364 5e-20(92) sensor histidine kinase SaeS(saeS) [1910] SERP1954 4e-15(75.9) sensor histidine kinase [2430] SERP2489 4e-15(75.9) sensor histidine kinase KdpD (EC:2.7.3.-)(kdpD) [2159] SERP2205 3e-09(56.2) sensor histidine kinase, putative [308] SERP0313 3e-08(53.1) sensor histidine kinase

Staphylococcus epidermidis ATCC 12228

Staphylococcus epidermidis RP62A

[19] SE0019 0(1032)
two-component sensor histidine kinase

[2472] SERP2533 0(1032)
sensory box histidine kinase YycG(yycG)

UniProt	Q4LAJ8
INSD	BAE03327.1 (DDBJ GenBank EMBL)
RefSeq	YP_251933.1
GI	70725019
UniParc	UPI000054B5AF

BLASTP
Database:UniProtKB:2010_04

show BLAST table

1	E=0	WALK_STAHJ	Sensor protein kinase walK	Alignment
2	E=0	C2LZY3_STAHO	Sensor protein	Alignment
3	E=0	C4WBG9_STAWA	Sensor protein	Alignment
4	E=0	D1WJ80_STAEP	Sensor protein	Alignment
5	E=0	C5QYM0_STAEP	Sensor protein	Alignment

HAMAP

No significant hit

InterPro
Database:interpro:25.0

IPR000014 PAS (Domain)
	PS50112 PAS
	SM00091 PAS
	TIGR00229 sensory_box
IPR000700 PAS-associated, C-terminal (Domain)
	PS50113 PAC
IPR003594 ATP-binding region, ATPase-like (Domain)
	G3DSA:3.30.565.10 ATP_bd_ATPase
	SM00387 HATPase_c
	PF02518 HATPase_c
	SSF55874 ATP_bd_ATPase
IPR003660 Histidine kinase, HAMP region (Domain)
	SM00304 HAMP
	PS50885 HAMP
	PF00672 HAMP
IPR003661 Histidine kinase A, N-terminal (Domain)
	PF00512 HisKA
	SM00388 HisKA
IPR004358 Histidine kinase related protein, C-terminal (Domain)
	PR00344 BCTRLSENSOR
IPR005467 Histidine kinase (Domain)
	PS50109 HIS_KIN
IPR009082 Histidine kinase, homodimeric (Domain)
	SSF47384 His_kin_homodim
IPR013767 PAS fold (Domain)
	PF00989 PAS

SignalP

No significant hit

TMHMM

Transmembrane 2

SOSUI

Transmembrane 2

size of protein

608 amino acids

molecular mass

69,925.53 Da

pI

4.88

aa composition

Ala	Val	Leu	Ile	Phe	Trp	Pro	Met	Gly	Ser
4.4 (27aa)	6.6 (40aa)	7.4 (45aa)	11.3 (69aa)	3.8 (23aa)	0.8 (5aa)	1.5 (9aa)	3.5 (21aa)	5.1 (31aa)	5.8 (35aa)
Thr	Cys	Asn	Gln	Tyr	Lys	His	Arg	Asp	Glu
5.9 (36aa)	0.2 (1aa)	8.6 (52aa)	4.4 (27aa)	3 (18aa)	5.8 (35aa)	1.5 (9aa)	5.8 (35aa)	6.1 (37aa)	8.7 (53aa)

>SH0018 signal transduction two-component sensor histidine kinase, VicK
ATGAAGTGGCTGAAACAGTTACAATCCCTTCACACCAAGCTTGTTATTGTTTATGTGTTA
TTGATTATTATTGGAATGCAGATCATCGGTCTATATTTCACTAATAGTTTAGAAAAAGAA
CTGACAAATAACTTCATGAAGAATATTAAACAGTATGCGACACAGCTTGAAGTTAACATT
GAGCGGATATACAGAGATGATCCCTCTAACGCTCAAAAAGAAGTTCAAAGTTTATTAAAT
GAGTATGCCAACCGTCAAGAAATTGAAGAAATTCGTTTTATTGATAAAGATCAAATTATC
ATGGCTACAGCGAAGATATCATCACATAATATGATTAATCAGAAAGTTAATGATAACTCC
GTTCAAAAAGCCTTATCGCTAGGAGAATCCAATAGTCACAATGTTTTAAAAGACTATGGT
AGCGGTAAAGAGCGAATTTGGATTTACAACTTACCCGTAAAGAATGGCAACGAGACGATT
GGTAATATTTACATAGAATCGAATATCAATGATGTATATAATCAGTTGAATAATATTAAC
CAAATATTCATTATCGGTACTGCGATTTCCCTCTTCATTACCGTTATACTCGGTTTCTTT
ATCGCAAGGACGATTACAAGACCGATTACGGACATGCGTAATCAGACGGTAGAGATGTCT
AAAGGTAATTATACGCAACGCGTTAAGATATATGGTAATGACGAAATCGGTGAATTAGCT
TTAGCCTTCAACAATTTGTCTAAACGAGTTCAAGAGGCACAAGCGAATACTGAGAGTGAG
AAACGTCGTTTAGACTCAGTTATCACGCATATGAGTGACGGTATTATCGCAACAGACCGA
CGTGGTCGTGTGCGTATCGTCAATGATATGGCGATAAAAATGTTAGGTATGTCTAAGGAA
GACTTAATCGGTTATTACATGTTAAGTGTATTGAATTTAGAAGACGAATTCTCATTAGAT
GAAATTCAAGAGAATAACGATAGCTTCTTATTAGATATAAATGAAGATGAAGGCATCATC
GCACGTGTGAATTTCAGTACGATTGTTCAAGAAACTGGATTTGTGACAGGTTACATCGCC
GTATTACATGACGTTACTGAACAACAACAAGTTGAACGTGAACGTCGCGAATTCGTTGCG
AACGTATCTCACGAATTACGTACGCCTTTAACATCGATGAATAGTTACATAGAGGCGCTT
GAAGAAGGTGTTTGGAAAGATGATAATTTAGCACCATCTTTCTTATCGGTAACACGTGAA
GAGACAGAACGAATGATACGTCTTGTTAATGATTTACTGCAATTATCGAAAATGGATAAC
GAATCCGAACAAATTACGAAGGAAATTGTCGACTTCAACATGTTCATTAATAAGATTATT
AACCGTCATGAAATGGCAGCGAAAGACACGACGTTTGTGCGTGAAATTCCTTCAGAAACC
ATCTTTACTGAAATTGATCCAGATAAGATGACACAAGTGTTTGATAACGTTATTACTAAT
GCGATGAAATATTCTCGTGGTGAAAAACGTGTCGAGTTCCACGTGAAACAAAACGCTTTA
TACAATCGTATGACGATTCGTATTAAAGATAATGGTATAGGTATTCCTATTAACAAAGTG
GATAAAATCTTTGATCGTTTCTATCGTGTAGATAAAGCGCGTACACGTAAAATGGGTGGT
ACTGGTTTAGGACTAGCCATTTCGAAAGAGATTGTAGAAGCGCATAATGGAAGAATTTGG
GCGAATAGTGTTGAAGGACAAGGTACATCGATATTTATTACACTTCCTTGTGAAGTTATA
GACGACGGTGATTGGGATGAAGAGTAA


>SH0018 signal transduction two-component sensor histidine kinase, VicK
MKWLKQLQSLHTKLVIVYVLLIIIGMQIIGLYFTNSLEKELTNNFMKNIKQYATQLEVNI
ERIYRDDPSNAQKEVQSLLNEYANRQEIEEIRFIDKDQIIMATAKISSHNMINQKVNDNS
VQKALSLGESNSHNVLKDYGSGKERIWIYNLPVKNGNETIGNIYIESNINDVYNQLNNIN
QIFIIGTAISLFITVILGFFIARTITRPITDMRNQTVEMSKGNYTQRVKIYGNDEIGELA
LAFNNLSKRVQEAQANTESEKRRLDSVITHMSDGIIATDRRGRVRIVNDMAIKMLGMSKE
DLIGYYMLSVLNLEDEFSLDEIQENNDSFLLDINEDEGIIARVNFSTIVQETGFVTGYIA
VLHDVTEQQQVERERREFVANVSHELRTPLTSMNSYIEALEEGVWKDDNLAPSFLSVTRE
ETERMIRLVNDLLQLSKMDNESEQITKEIVDFNMFINKIINRHEMAAKDTTFVREIPSET
IFTEIDPDKMTQVFDNVITNAMKYSRGEKRVEFHVKQNALYNRMTIRIKDNGIGIPINKV
DKIFDRFYRVDKARTRKMGGTGLGLAISKEIVEAHNGRIWANSVEGQGTSIFITLPCEVI
DDGDWDEE

CDS Information : SH0018

Genomic map

Staphylococcus haemolyticus JCSC1435 chromosome

Location

Annotation

Comparative genome

Related links to external database

Computational search results

Calculated information (Amino acid sequence)

Sequence