small fontnormal fontlarge fontmail to

CDS Information : SH0044

close allopen/close all

close this sectionGenomic map

Display

Staphylococcus haemolyticus JCSC1435 chromosome

 Legend Jump
Overview 
Genome

close this sectionLocation

Organism Staphylococcus haemolyticus JCSC1435
Replicon chromosome
Start / Stop / Direction 54,927 / 54,061 / -
Location complement(54061..54927)
Type CDS
Length 867 bp (288 aa)

close this sectionAnnotation

Product hypothetical protein, similar to LysR-gltR family transcription regulator
Gene name
Functional category Information pathways
- RNA synthesis
EC number
Note
KEGG pathway
Sequence feature
References

close this sectionComparative genome

Table
Display BBH1e-1001e-501e-101e-3
Staphylococcus epidermidis ATCC 12228Staphylococcus epidermidis RP62A
[2310] SE2310 7e-14(70.5)
LysR-type transcriptional regulator
[105] SERP0110 7e-14(70.5)
LysR family transcriptional regulator

close this sectionRelated links to external database

UniProtQ4LAH2
INSDBAE03353.1 (DDBJ GenBank EMBL)
RefSeqYP_251959.1
GI70725045
UniParcUPI000054B5C9

close this sectionComputational search results

BLASTP
Database:UniProtKB:2010_04
1E=1e-163Q4LAH2_STAHJSimilar to LysR-gltR family transcription regulatorAlignment
2E=2e-94C5QD31_STAEPLysR family transcriptional regulatorAlignment
3E=6e-58C5QAR9_STAEPLysR family transcriptional regulatorAlignment
4E=7e-49C3FEQ3_BACTBTranscriptional regulator, LysRAlignment
5E=7e-49C3CW67_BACTUTranscriptional regulator, LysRAlignment
HAMAP No significant hit
InterPro
Database:interpro:25.0
IPR000847 Bacterial regulatory protein, LysR (Domain)
 [3-61]  6.70000000000001e-15 PF00126
PF00126   HTH_1
 [1-58]  PS50931
PS50931   HTH_LYSR
IPR005119 LysR, substrate-binding (Domain)
 [90-279]  9.60000000000003e-30 PF03466
PF03466   LysR_substrate
IPR011991 Winged helix repressor DNA-binding (Domain)
 [1-87]  7.40000780398385e-19 G3DSA:1.10.10.10
G3DSA:1.10.10.10   Wing_hlx_DNA_bd
SignalP No significant hit
TMHMM No significant hit
SOSUI No significant hit

close this sectionCalculated information (Amino acid sequence)

size of protein 288 amino acids
molecular mass 33,129.30 Da
pI 8.73
aa composition
AlaValLeuIlePheTrpProMetGlySer
3.8
(11aa)		4.5
(13aa)		9.4
(27aa)		12.2
(35aa)		4.2
(12aa)		0.3
(1aa)		1.7
(5aa)		2.1
(6aa)		4.5
(13aa)		4.5
(13aa)
ThrCysAsnGlnTyrLysHisArgAspGlu
4.2
(12aa)		2.1
(6aa)		12.8
(37aa)		3.8
(11aa)		3.5
(10aa)		11.1
(32aa)		1.7
(5aa)		2.1
(6aa)		3.8
(11aa)		7.6
(22aa)

open this sectionSequence