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CDS Information : SH0056

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close this sectionGenomic map

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Staphylococcus haemolyticus JCSC1435 chromosome

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Overview 
Genome

close this sectionLocation

Organism Staphylococcus haemolyticus JCSC1435
Replicon chromosome
Start / Stop / Direction 64,143 / 65,819 / +
Location 64143..65819
Type CDS
Length 1,677 bp (558 aa)

close this sectionAnnotation

Product staphylococcal casette chromosome site specific recombinase CcrC
Gene name ccrC
Functional category Information pathways
- DNA recombination
EC number
Note
KEGG pathway
Sequence feature
References

close this sectionComparative genome

Table
Display BBH1e-1001e-501e-101e-3
Staphylococcus epidermidis ATCC 12228Staphylococcus epidermidis RP62A
[36] SE0036 4e-60(225)
cassette chromosome recombinase B
[2439] SERP2499 4e-62(231)
cassette chromosome recombinase B

close this sectionRelated links to external database

UniProtQ4LAG0
INSDBAE03365.1 (DDBJ GenBank EMBL)
RefSeqYP_251971.1
GI70725057
UniParcUPI000054B5D4

close this sectionComputational search results

BLASTP
Database:UniProtKB:2010_04
1E=0Q4LAG0_STAHJStaphylococcal casette chromosome site specific recombinase CcrCAlignment
2E=0Q0P7G2_STAAUCassette chromosome recombinase CAlignment
3E=0A4ZNP0_STAHACassette chromosome recombinase C6Alignment
4E=0B5MF26_STAAUCassette chromosome recombinase CAlignment
5E=0A4ZNP1_STAEPCassette chromosome recombinase C7Alignment
HAMAP No significant hit
InterPro
Database:interpro:25.0
IPR006119 Resolvase, N-terminal (Domain)
 [5-138]  4.19999771339602e-23 G3DSA:3.40.50.1390
G3DSA:3.40.50.1390   Resolv_N
 [5-154]  1.99999999999999e-26 PF00239
PF00239   Resolvase
 [5-155]  5.8999880940569e-44 SM00857
SM00857   Resolvase
 [3-156]  8.6e-28 SSF53041
SSF53041   Resolv_N
IPR007684 Zinc finger, Ogr/Delta-type (Domain)
 [305-361]  3.5e-11 PF04606
PF04606   Ogr_Delta
IPR007684 Phage transcriptional activator, Ogr/Delta (Family)
 [305-361]  3.5e-11 PF04606
PF04606   Ogr_Delta
IPR011109 Recombinase (Family)
 [180-285]  1.4e-20 PF07508
PF07508   Recombinase
SignalP No significant hit
TMHMM No significant hit
SOSUI No significant hit

close this sectionCalculated information (Amino acid sequence)

size of protein 558 amino acids
molecular mass 64,222.77 Da
pI 9.88
aa composition
AlaValLeuIlePheTrpProMetGlySer
4.1
(23aa)		5.7
(32aa)		8.2
(46aa)		8.6
(48aa)		3.8
(21aa)		0.5
(3aa)		2.3
(13aa)		2.7
(15aa)		5.2
(29aa)		8.1
(45aa)
ThrCysAsnGlnTyrLysHisArgAspGlu
4.3
(24aa)		0.9
(5aa)		6.5
(36aa)		5.4
(30aa)		3.8
(21aa)		10.6
(59aa)		2
(11aa)		5.2
(29aa)		5
(28aa)		7.2
(40aa)

open this sectionSequence