CDS Information : SH0074

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Staphylococcus haemolyticus JCSC1435 chromosome

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Overview
Genome

Center position		change
ID		change
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Genome	Display	Sync
chromosome

Location

Organism	Staphylococcus haemolyticus JCSC1435
Replicon	chromosome
Start / Stop / Direction	83,965 / 83,480 / -
Location	complement(83480..83965)
Type	CDS
Length	486 bp (161 aa)

Annotation

Product	lactose operon transcription activator [truncated]
Gene name
Functional category	Information pathways - RNA synthesis
EC number
Note
KEGG pathway
Sequence feature
References

Comparative genome

Table

Display	BBH1e-1001e-501e-101e-3

Staphylococcus epidermidis ATCC 12228	Staphylococcus epidermidis RP62A
[1961] SE1961 7e-07(45.8) transcription regulatory protein [165] SE0165 2e-05(40.8) two-component response regulator [1190] SE1190 0.0002(38.1) AraC family transcriptional regulator	[1926] SERP1972 8e-07(45.8) AraC family transcriptional regulator [2351] SERP2406 2e-06(44.7) AraC family DNA-binding response regulator [1044] SERP1069 0.0002(38.1) AraC family transcriptional regulator

UniProt	Q4LAE2
INSD	BAE03383.1 (DDBJ GenBank EMBL)
RefSeq	YP_251989.1
GI	70725075
UniParc	UPI000054B5E6

Computational search results

BLASTP
Database:UniProtKB:2010_04

show BLAST table

1	E=1e-89	Q4LAE2_STAHJ	Lactose operon transcription activator	Alignment
2	E=5e-76	LACR_STAXY	Lactose operon transcription activator	Alignment
3	E=4e-64	Q4A0Y8_STAS1	Lactose operon transcription activator	Alignment
4	E=7e-35	B9DL33_STACT	Lactose operon transcription regulator	Alignment
5	E=8e-35	Q8KQ88_STACA	Lactose operon transcriptional activator	Alignment

HAMAP

No significant hit

InterPro
Database:interpro:25.0

IPR000005 Helix-turn-helix, AraC type (Domain)
	PS01124 HTH_ARAC_FAMILY_2
	PF00165 HTH_AraC
	PS00041 HTH_ARAC_FAMILY_1
	SM00342 HTH_ARAC
IPR009057 Homeodomain-like (Domain)
	SSF46689 Homeodomain_like
IPR012287 Homeodomain-related (Domain)
	G3DSA:1.10.10.60 Homeodomain-rel
IPR018062 HTH domain AraC-type, conserved site (Conserved_site)
	PS00041 HTH_ARAC_FAMILY_1

SignalP

No significant hit

TMHMM

No significant hit

SOSUI

No significant hit

Calculated information (Amino acid sequence)

size of protein

161 amino acids

molecular mass

19,162.01 Da

8.44

aa composition

Ala	Val	Leu	Ile	Phe	Trp	Pro	Met	Gly	Ser
3.1 (5aa)	5.6 (9aa)	9.3 (15aa)	10.6 (17aa)	5.6 (9aa)	0.6 (1aa)	1.9 (3aa)	1.9 (3aa)	0.6 (1aa)	8.7 (14aa)
Thr	Cys	Asn	Gln	Tyr	Lys	His	Arg	Asp	Glu
5.6 (9aa)	1.9 (3aa)	7.5 (12aa)	6.8 (11aa)	6.2 (10aa)	6.8 (11aa)	4.3 (7aa)	3.7 (6aa)	3.1 (5aa)	6.2 (10aa)

Sequence

>SH0074 lactose operon transcription activator [truncated]
TTGATTATTCTATGTTGGTTCATTCAGCTTATTTGCGAACTCTCTCAAAGTATTGAGTCA
AACAACTCCAATGATATTCTAATTATGCAATATTTATATCAATTAGTTTATACCTTACAA
GAAAAGTTCCCTAAAAATTTTTCAGTGCAAGTTGATATTGTAAATGAAGATATTCAACAT
GCTGTTGATTTTATAAATACAAATTATCAAAAACACATCACTGTTGAAGAAGTAGCTAAA
ACTGTCAATATTACACGAAGTCATTTATATAAATTATTCAAAAAGAATTTGAGTTGTTCG
CCTAAAGAATACTTAACCTATATAAGGATGTATCATGCTTCACAATTATTGATACATACG
AACACACATATAAGTGAGATATCAAGACGCGTTGGTTACAAAGATCCACTATTATTCTCT
AAAAATTTCACAAAACATTTTGAAATCAGCGCTTCTGAATATCGGCGCCAATTTGCCAAT
CAATGA


>SH0074 lactose operon transcription activator [truncated]
MIILCWFIQLICELSQSIESNNSNDILIMQYLYQLVYTLQEKFPKNFSVQVDIVNEDIQH
AVDFINTNYQKHITVEEVAKTVNITRSHLYKLFKKNLSCSPKEYLTYIRMYHASQLLIHT
NTHISEISRRVGYKDPLLFSKNFTKHFEISASEYRRQFANQ

CDS Information : SH0074

Genomic map

Staphylococcus haemolyticus JCSC1435 chromosome

Location

Annotation

Comparative genome

Related links to external database

Computational search results

Calculated information (Amino acid sequence)

Sequence