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CDS Information : SH0089

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close this sectionGenomic map

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Staphylococcus haemolyticus JCSC1435 chromosome

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Overview 
Genome

close this sectionLocation

Organism Staphylococcus haemolyticus JCSC1435
Replicon chromosome
Start / Stop / Direction 96,761 / 97,504 / +
Location 96761..97504
Type CDS
Length 744 bp (247 aa)

close this sectionAnnotation

Product glycerophosphoryl diester phosphodiesterase homolog
Gene name
Functional category Intermediary metabolism
- Metabolism of lipids
EC number
Note
KEGG pathway
Sequence feature
References

close this sectionComparative genome

Table
Display BBH1e-1001e-501e-101e-3
Staphylococcus epidermidis ATCC 12228Staphylococcus epidermidis RP62A
[2462] SERP2523 3e-146(509)
glycerophosphoryl diester phosphodiesterase UgpQ, putative

close this sectionRelated links to external database

UniProtQ4LAC7
INSDBAE03398.1 (DDBJ GenBank EMBL)
RefSeqYP_252004.1
GI70725090
UniParcUPI0000006C77

close this sectionComputational search results

BLASTP
Database:UniProtKB:2010_04
1E=1e-143Q9S3K5_STAAMGlycerophosphoryl diester phosphodiesterase homologAlignment
2E=1e-143Q7A8C8_STAANSA0036 proteinAlignment
3E=1e-143Q7A211_STAAWMW0029 proteinAlignment
4E=1e-143Q6GKQ9_STAARGlycerophosphoryl diester phosphodiesteraseAlignment
5E=1e-143Q5HK29_STAEQGlycerophosphoryl diester phosphodiesterase UgpQ, putativeAlignment
HAMAP No significant hit
InterPro
Database:interpro:25.0
IPR004129 Glycerophosphoryl diester phosphodiesterase (Family)
 [7-240]  1e-45 PF03009
PF03009   GDPD
IPR017946 PLC-like phosphodiesterase, TIM beta/alpha-barrel domain (Domain)
 [4-245]  6.1e-57 G3DSA:3.20.20.190
G3DSA:3.20.20.190   no description
 [1-247]  7.6e-60 SSF51695
SSF51695   PLC-like phosphodiesterases
SignalP No significant hit
TMHMM No significant hit
SOSUI No significant hit

close this sectionCalculated information (Amino acid sequence)

size of protein 247 amino acids
molecular mass 27,899.60 Da
pI 4.66
aa composition
AlaValLeuIlePheTrpProMetGlySer
7.7
(19aa)		8.1
(20aa)		9.3
(23aa)		6.1
(15aa)		3.2
(8aa)		2
(5aa)		2.4
(6aa)		2.8
(7aa)		4.9
(12aa)		4.9
(12aa)
ThrCysAsnGlnTyrLysHisArgAspGlu
6.5
(16aa)		0.4
(1aa)		8.5
(21aa)		3.2
(8aa)		2.8
(7aa)		7.7
(19aa)		2
(5aa)		2.4
(6aa)		6.1
(15aa)		8.9
(22aa)

open this sectionSequence