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CDS Information : SH0954

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close this sectionGenomic map

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Staphylococcus haemolyticus JCSC1435 chromosome

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Overview 
Genome

close this sectionLocation

Organism Staphylococcus haemolyticus JCSC1435
Replicon chromosome
Start / Stop / Direction 955,696 / 956,766 / +
Location 955696..956766
Type CDS
Length 1,071 bp (356 aa)

close this sectionAnnotation

Product D-alanine-D-alanine ligase
Gene name ddlA
Functional category Cell envelope and cellular processes
- Cell wall
EC number
Note
KEGG pathway
Sequence feature
References

close this sectionComparative genome

Display BBH1e-1001e-501e-101e-3
Staphylococcus epidermidis ATCC 12228Staphylococcus epidermidis RP62A
[1681] SE1681 1e-180(624)
D-alanyl-alanine synthetase A (EC:6.3.2.4)(ddl)
[1653] SERP1690 1e-180(624)
D-alanyl-alanine synthetase A (EC:6.3.2.4)(ddl)

close this sectionComputational search results

BLASTP
Database:UniProtKB:2010_04
1E=0DDL_STAHJD-alanine--D-alanine ligase
D-alanylalanine synthetase
D-Ala-D-Ala ligase
Alignment
2E=0C2LXI9_STAHOD-alanine--D-alanine ligaseAlignment
3E=0C5QLB0_STAEPD-alanyl-alanine synthetase AAlignment
4E=0B9CTZ3_STACPD-alanine--D-alanine ligase (D-alanylalanine synthetase)(D-Ala-D-Ala ligase)Alignment
5E=0C4WBN7_STAWAD-alanine--D-alanine ligaseAlignment
HAMAP No significant hit
InterPro
Database:interpro:25.0
IPR000291 D-alanine--D-alanine ligase/VANA/B/C, conserved site (Conserved_site)
 [96-107]  PS00843
PS00843   DALA_DALA_LIGASE_1
 [284-312]  PS00844
PS00844   DALA_DALA_LIGASE_2
IPR000291 D-alanine--D-alanine ligase/VANA/B/C (Family)
 [284-312]  PS00844
PS00844   DALA_DALA_LIGASE_2
 [96-107]  PS00843
PS00843   DALA_DALA_LIGASE_1
IPR005905 D-alanine--D-alanine ligase (Family)
 [5-342]  TIGR01205
TIGR01205   D_ala_D_alaTIGR
IPR011095 D-alanine--D-alanine ligase, C-terminal (Domain)
 [136-339]  2.59999999999995e-69 PF07478
PF07478   Dala_Dala_lig_C
IPR011127 D-alanine--D-alanine ligase, N-terminal (Domain)
 [5-118]  4.80000000000001e-29 PF01820
PF01820   Dala_Dala_lig_N
IPR011761 ATP-grasp fold (Domain)
 [134-339]  PS50975
PS50975   ATP_GRASP
IPR013816 ATP-grasp fold, subdomain 2 (Domain)
 [192-344]  1.10000150671643e-47 G3DSA:3.30.470.20
G3DSA:3.30.470.20   ATP_grasp_subdomain_2
IPR013817 Pre-ATP-grasp fold (Domain)
 [1-116]  3.19999899046355e-29 G3DSA:3.40.50.20
G3DSA:3.40.50.20   Pre-ATP_grasp
IPR016185 PreATP-grasp-like fold (Domain)
 [3-128]  1.1e-33 SSF52440
SSF52440   PreATP-grasp-like
SignalP No significant hit
TMHMM No significant hit
SOSUI No significant hit

close this sectionCalculated information (Amino acid sequence)

size of protein 356 amino acids
molecular mass 40,220.82 Da
pI 4.49
aa composition
AlaValLeuIlePheTrpProMetGlySer
5.6
(20aa)
6.2
(22aa)
9.6
(34aa)
8.1
(29aa)
3.9
(14aa)
0.8
(3aa)
3.7
(13aa)
2.5
(9aa)
6.5
(23aa)
5.9
(21aa)
ThrCysAsnGlnTyrLysHisArgAspGlu
4.5
(16aa)
0.8
(3aa)
5.9
(21aa)
2.5
(9aa)
4.5
(16aa)
9
(32aa)
1.1
(4aa)
2.2
(8aa)
6.7
(24aa)
9.8
(35aa)

open this sectionSequence