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CDS Information : SH1340

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close this sectionGenomic map

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Staphylococcus haemolyticus JCSC1435 chromosome

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Overview 
Genome

close this sectionLocation

Organism Staphylococcus haemolyticus JCSC1435
Replicon chromosome
Start / Stop / Direction 1,374,945 / 1,376,291 / +
Location 1374945..1376291
Type CDS
Length 1,347 bp (448 aa)

close this sectionAnnotation

Product similar to unknown protein
Gene name
Functional category Similar to unknown proteins
EC number
Note
KEGG pathway
Sequence feature
References

close this sectionComparative genome

Table
Display BBH1e-1001e-501e-101e-3
Staphylococcus epidermidis ATCC 12228Staphylococcus epidermidis RP62A
[1263] SE1263 0(842)
hypothetical protein
[1118] SERP1144 0(842)
hypothetical protein

close this sectionRelated links to external database

UniProtQ4L6S6
INSDBAE04649.1 (DDBJ GenBank EMBL)
RefSeqYP_253255.1
GI70726341
UniParcUPI000054BAB5

close this sectionComputational search results

BLASTP
Database:UniProtKB:2010_04
1E=0Q4L6S6_STAHJSimilar to unknown proteinAlignment
2E=0C2M0Y9_STAHOPutative uncharacterized proteinAlignment
3E=0C5QSW7_STAEP2-methylthioadenine synthaseAlignment
4E=0B9CV94_STACPPutative uncharacterized proteinAlignment
5E=0C4WCB2_STAWAPutative uncharacterized proteinAlignment
HAMAP No significant hit
InterPro
Database:interpro:25.0
IPR002792 Deoxyribonuclease/rho motif-related TRAM (Domain)
 [371-433]  PS50926
PS50926   TRAM
 [376-422]  0.052 PF01938
PF01938   TRAM
IPR005839 Protein of unknown function UPF0004 (Family)
 [147-167]  PS01278
PS01278   MTTASE_RADICAL
 [4-98]  9.10000000000001e-23 PF00919
PF00919   UPF0004
 [3-429]  TIGR00089
TIGR00089   UPF0004
IPR006467 MiaB-like tRNA modifying enzyme (Family)
 [6-419]  TIGR01579
TIGR01579   MiaB-like-C
IPR006638 Elongator protein 3/MiaB/NifB (Domain)
 [143-360]  2.1000026783403e-58 SM00729
SM00729   Elp3
IPR007197 Radical SAM (Domain)
 [148-318]  3.90000000000001e-28 PF04055
PF04055   Radical_SAM
IPR013785 Aldolase-type TIM barrel (Domain)
 [150-344]  3.19999899046347e-08 G3DSA:3.20.20.70
G3DSA:3.20.20.70   Aldolase_TIM
IPR013848 Methylthiotransferase, N-terminal (Domain)
 [4-98]  9.10000000000001e-23 PF00919
PF00919   UPF0004
 [2-114]  PS51449
PS51449   MTTASE_N
IPR020612 Methylthiotransferase, conserved site (Conserved_site)
 [147-167]  PS01278
PS01278   MTTASE_RADICAL
SignalP No significant hit
TMHMM No significant hit
SOSUI No significant hit

close this sectionCalculated information (Amino acid sequence)

size of protein 448 amino acids
molecular mass 50,972.87 Da
pI 5.28
aa composition
AlaValLeuIlePheTrpProMetGlySer
5.8
(26aa)		9.2
(41aa)		7.1
(32aa)		7.6
(34aa)		3.6
(16aa)		0.4
(2aa)		2.9
(13aa)		2
(9aa)		5.8
(26aa)		4.5
(20aa)
ThrCysAsnGlnTyrLysHisArgAspGlu
6.5
(29aa)		1.6
(7aa)		4.5
(20aa)		4.5
(20aa)		3.6
(16aa)		6.3
(28aa)		2.7
(12aa)		6
(27aa)		6.7
(30aa)		8.9
(40aa)

open this sectionSequence