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CDS Information : SH1838

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close this sectionGenomic map

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Staphylococcus haemolyticus JCSC1435 chromosome

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Overview 
Genome

close this sectionLocation

Organism Staphylococcus haemolyticus JCSC1435
Replicon chromosome
Start / Stop / Direction 1,888,353 / 1,884,904 / -
Location complement(1884904..1888353)
Type CDS
Length 3,450 bp (1,149 aa)

close this sectionAnnotation

Product pyruvate carboxylase
Gene name pycA
Functional category Intermediary metabolism
- Metabolism of carbohydrates and related molecules
EC number
Note
KEGG pathway
Sequence feature
References

close this sectionComparative genome

Display BBH1e-1001e-501e-101e-3
Staphylococcus epidermidis ATCC 12228Staphylococcus epidermidis RP62A
[813] SE0813 0(2093)
pyruvate carboxylase (EC:6.4.1.1)
[685] SERP0704 0(2097)
pyruvate carboxylase (EC:6.4.1.1)(pyc)

close this sectionRelated links to external database

UniProtQ4L5C8
INSDBAE05147.1 (DDBJ GenBank EMBL)
RefSeqYP_253753.1
GI70726839
UniParcUPI000054BC95

close this sectionComputational search results

BLASTP
Database:UniProtKB:2010_04
1E=0Q4L5C8_STAHJPyruvate carboxylaseAlignment
2E=0C2M1B8_STAHOPyruvate carboxylaseAlignment
3E=0C5QRR7_STAEPPyruvate carboxylaseAlignment
4E=0B9CTP6_STACPPyruvate carboxylaseAlignment
5E=0Q5HQ53_STAEQPyruvate carboxylaseAlignment
HAMAP No significant hit
InterPro
Database:interpro:25.0
IPR000089 Biotin/lipoyl attachment (Domain)
 [1078-1145]  PS50968
PS50968   BIOTINYL_LIPOYL
 [1084-1145]  1.6e-14 PF00364
PF00364   Biotin_lipoyl
IPR000891 Pyruvate carboxyltransferase (Domain)
 [541-788]  9.40000000000003e-23 PF00682
PF00682   HMGL-like
 [533-802]  PS50991
PS50991   PYR_CT
IPR003379 Conserved carboxylase region (Domain)
 [829-1030]  3.39999999999996e-71 PF02436
PF02436   PYC_OADA
IPR005479 Carbamoyl-phosphate synthase L chain, ATP-binding (Domain)
 [118-323]  2.30000000000004e-72 PF02786
PF02786   CPSase_L_D2
 [156-170]  PS00866
PS00866   CPSASE_1
 [288-295]  PS00867
PS00867   CPSASE_2
IPR005481 Carbamoyl-phosphate synthetase large chain, N-terminal (Domain)
 [3-112]  2.50000000000001e-38 PF00289
PF00289   CPSase_L_chain
IPR005482 Biotin carboxylase, C-terminal (Domain)
 [344-451]  4.69998262513195e-50 SM00878
SM00878   Biotin_carb_C
 [344-451]  2.90000000000001e-29 PF02785
PF02785   Biotin_carb_C
IPR005930 Pyruvate carboxylase (Family)
 [6-1146]  TIGR01235
TIGR01235   pyruv_carbox
 [1-1147]  PIRSF001594
PIRSF001594   Pyruv_carbox
IPR011053 Single hybrid motif (Domain)
 [1063-1146]  1.2e-23 SSF51230
SSF51230   Hybrid_motif
IPR011054 Rudiment single hybrid motif (Domain)
 [338-461]  4.3e-41 SSF51246
SSF51246   Rudmnt_hyb_motif
IPR011761 ATP-grasp fold (Domain)
 [125-319]  PS50975
PS50975   ATP_GRASP
IPR011764 Biotin carboxylation region (Domain)
 [3-455]  PS50979
PS50979   BC
IPR013785 Aldolase-type TIM barrel (Domain)
 [525-812]  1.10000150671643e-51 G3DSA:3.20.20.70
G3DSA:3.20.20.70   Aldolase_TIM
IPR013816 ATP-grasp fold, subdomain 2 (Domain)
 [89-459]  3.1999989904665e-110 G3DSA:3.30.470.20
G3DSA:3.30.470.20   ATP_grasp_subdomain_2
IPR013817 Pre-ATP-grasp fold (Domain)
 [3-88]  8.40001703163729e-31 G3DSA:3.40.50.20
G3DSA:3.40.50.20   Pre-ATP_grasp
IPR016185 PreATP-grasp-like fold (Domain)
 [3-118]  1.8e-46 SSF52440
SSF52440   PreATP-grasp-like
SignalP No significant hit
TMHMM No significant hit
SOSUI No significant hit

close this sectionCalculated information (Amino acid sequence)

size of protein 1149 amino acids
molecular mass 128,927.13 Da
pI 4.99
aa composition
AlaValLeuIlePheTrpProMetGlySer
6.9
(79aa)
7
(81aa)
7.6
(87aa)
7.8
(90aa)
4.4
(50aa)
0.4
(5aa)
3.9
(45aa)
2.3
(27aa)
7.3
(84aa)
5.2
(60aa)
ThrCysAsnGlnTyrLysHisArgAspGlu
5.5
(63aa)
0.4
(5aa)
5.6
(64aa)
3.8
(44aa)
3.7
(43aa)
6.6
(76aa)
1.9
(22aa)
4.8
(55aa)
6.2
(71aa)
8.5
(98aa)

open this sectionSequence