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CDS Information : SH2293

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close this sectionGenomic map

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Staphylococcus haemolyticus JCSC1435 chromosome

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Overview 
Genome

close this sectionLocation

Organism Staphylococcus haemolyticus JCSC1435
Replicon chromosome
Start / Stop / Direction 2,327,358 / 2,325,697 / -
Location complement(2325697..2327358)
Type CDS
Length 1,662 bp (553 aa)

close this sectionAnnotation

Product arginyl-tRNA synthetase
Gene name argS
Functional category Information pathways
- Protein synthesis
EC number
Note
KEGG pathway
Sequence feature
References

close this sectionComparative genome

Table
Display BBH1e-1001e-501e-101e-3
Staphylococcus epidermidis ATCC 12228Staphylococcus epidermidis RP62A
[380] SE0380 0(1055)
arginyl-tRNA synthetase (EC:6.1.1.19)(argS)
[257] SERP0262 0(1048)
arginyl-tRNA synthetase (EC:6.1.1.19)(argS)

close this sectionRelated links to external database

UniProtQ4L425
INSDBAE05602.1 (DDBJ GenBank EMBL)
RefSeqYP_254208.1
GI70727292
UniParcUPI000054BE4E

close this sectionComputational search results

BLASTP
Database:UniProtKB:2010_04
1E=0SYR_STAHJArginyl-tRNA synthetase
Arginine--tRNA ligase		Alignment
2E=0C2LY08_STAHOArginine--tRNA ligaseAlignment
3E=0C5QPX2_STAEPArginyl-tRNA synthetaseAlignment
4E=0B9CRB9_STACPArginyl-tRNA synthetaseAlignment
5E=0D1WJR6_STAEPArginine--tRNA ligaseAlignment
HAMAP No significant hit
InterPro
Database:interpro:25.0
IPR001278 Arginyl-tRNA synthetase, class Ic (Family)
 [102-414]  4.30000000000003e-72 PF00750
PF00750   tRNA-synt_1d
 [122-137]  1.70000295590054e-24 PR01038 [137-153]  1.70000295590054e-24 PR01038 [161-174]  1.70000295590054e-24 PR01038 [304-325]  1.70000295590054e-24 PR01038
PR01038   TRNASYNTHARG
 [7-553]  TIGR00456
TIGR00456   argS
IPR001412 Aminoacyl-tRNA synthetase, class I, conserved site (Conserved_site)
 [132-141]  PS00178
PS00178   AA_TRNA_LIGASE_I
IPR001412 Aminoacyl-tRNA synthetase, class I (Domain)
 [132-141]  PS00178
PS00178   AA_TRNA_LIGASE_I
IPR001412 Aminoacyl-tRNA synthetase, class I (Family)
 [132-141]  PS00178
PS00178   AA_TRNA_LIGASE_I
IPR005148 Arginyl tRNA synthetase, class Ic, N-terminal (Domain)
 [1-113]  6.6e-31 SSF55190
SSF55190   Arg-tRNA-synth_Ic_N
 [10-93]  5.90000000000001e-23 PF03485
PF03485   Arg_tRNA_synt_N
 [6-111]  2.49999811956467e-09 G3DSA:3.30.1360.70
G3DSA:3.30.1360.70   Arg-tRNA-synth_Ic_N
IPR008909 DALR anticodon binding (Domain)
 [436-553]  7.69999999999997e-36 PF05746
PF05746   DALR_1
 [435-553]  1.20000117458134e-56 SM00836
SM00836   DALR_1
IPR009080 Aminoacyl-tRNA synthetase, class 1a, anticodon-binding (Domain)
 [430-553]  8.7e-40 SSF47323
SSF47323   tRNAsyn_1a_bind
IPR014729 Rossmann-like alpha/beta/alpha sandwich fold (Domain)
 [119-438]  1.09999184471398e-101 G3DSA:3.40.50.620
G3DSA:3.40.50.620   Rossmann-like_a/b/a_fold
IPR015945 Arginyl-tRNA synthetase, class Ic, core (Domain)
 [122-137]  1.70000295590054e-24 PR01038 [137-153]  1.70000295590054e-24 PR01038 [161-174]  1.70000295590054e-24 PR01038 [304-325]  1.70000295590054e-24 PR01038
PR01038   TRNASYNTHARG
 [102-414]  4.30000000000003e-72 PF00750
PF00750   tRNA-synt_1d
SignalP No significant hit
TMHMM No significant hit
SOSUI No significant hit

close this sectionCalculated information (Amino acid sequence)

size of protein 553 amino acids
molecular mass 62,092.85 Da
pI 4.77
aa composition
AlaValLeuIlePheTrpProMetGlySer
10.3
(57aa)		4.9
(27aa)		7.8
(43aa)		8.1
(45aa)		3.4
(19aa)		0.4
(2aa)		2.5
(14aa)		2.5
(14aa)		5.1
(28aa)		4.5
(25aa)
ThrCysAsnGlnTyrLysHisArgAspGlu
6.1
(34aa)		0.4
(2aa)		6.7
(37aa)		2.4
(13aa)		4.3
(24aa)		7.6
(42aa)		2.5
(14aa)		4
(22aa)		8.9
(49aa)		7.6
(42aa)

open this sectionSequence