CDS Information : SJA_C1-00060

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Sphingobium japonicum UT26S (= NBRC 101211) chromosome1	Legend Jump
Overview  Genome Clone

Center position		change
ID		change
Gene name		change

Organism	Sphingobium japonicum UT26S (= NBRC 101211)
Replicon	chromosome1
Start / Stop / Direction	3,824 / 4,420 / +
Location	3824..4420
Type	CDS
Length	597 bp (198 aa)

Product	sigma 54
Gene name	rpoN
Functional category	Information pathways - RNA synthesis - - regulation
EC number
Note	ribosome-associated protein Y (PSrp-1)
KEGG pathway
Sequence feature
References

BLASTP Database:UniProtKB:8.8 show BLAST table	1 E=5e-97 Q1ND95_9SPHN Sigma 54 modulation protein/ribosomal protein S30EA Alignment 2 E=7e-65 Q1GP80_SPHAL SSU ribosomal protein S30P / sigma 54 modulation protein Alignment 3 E=1e-63 Q2GC62_NOVAD SSU ribosomal protein S30P Alignment 4 E=9e-62 Q2N6K4_9SPHN Ribosome-associated protein Y by acc 5 E=2e-50 Q5NRJ2_ZYMMO Sigma 54 modulation protein/ribosomal protein S30EA Alignment
HAMAP	No significant hit
InterPro Database:interpro:16.0	IPR003489 Sigma 54 modulation protein/ribosomal protein S30EA (Domain) PF02482   Ribosomal_S30AE SSF69754   Ribosome binding protein Y (YfiA homologue) G3DSA:3.30.160.100   no description TIGR00741   yfiA: ribosomal subunit interface protein
SignalP	No significant hit
TMHMM	No significant hit
SOSUI	No significant hit

size of protein	198 amino acids
molecular mass	21,725.53 Da
pI	5.32
aa composition	Ala Val Leu Ile Phe Trp Pro Met Gly Ser 16.7 (33aa) 7.1 (14aa) 7.6 (15aa) 4 (8aa) 3.5 (7aa) 1 (2aa) 4 (8aa) 3 (6aa) 6.1 (12aa) 4 (8aa) Thr Cys Asn Gln Tyr Lys His Arg Asp Glu 4.5 (9aa) 1 (2aa) 3 (6aa) 4 (8aa) 2.5 (5aa) 3 (6aa) 3 (6aa) 7.6 (15aa) 6.1 (12aa) 8.1 (16aa)

>SJA_C1-00060 sigma 54
ATGGATATTCGTGTTTCCGGGCATCAGGTCGATACGGGCGACGCGCTCAAGCAGCATGTC
TGGACCCGTCTGGAGGCCATGGCCGAGAAATATTTTTCCCGCGCGCTTTCCGCCCAGGTC
ACGTTCCGGCCGGCCCCGCACGGCGCCTTCCATTGCGACATCGTCTGCCATGTCATGACC
GGCCTGATCCTCAAGGGCGCCGGAGAGGCGCAGGAGGCGCATCCCGCCTTCGATCAGGCG
GCCGAGCGGATCGAGAAGCAGTTGCGCCGCTACCTCCGCCGCCTGAAGGACCGCAGCGCC
CAGGCCGCCGCGGCCGAGGCGAACCGGGCCAATGGTTTCAGCGTTGAGGAGCTTGACGGC
GCAGGCTACACGATTTTCGCATCCCCGGCCGATGAGGAGGAACCGGCCGAAGCGCCGCTG
ATCGTGGCGGAAACCAAGGTCGACATTCCCGAAGCCAGCGTGTCGGATGCGGTGATGATG
CTCGACCTGCGCAACACCAACGCGCTGTTGTTCGTCAATGCCGGGACCGCGGCGTACAAC
ATGGTCTATCGCCGGCAGGACGGGACCATCGGCTGGGTCGAGCCCCGCCTGGCCTGA


>SJA_C1-00060 sigma 54
MDIRVSGHQVDTGDALKQHVWTRLEAMAEKYFSRALSAQVTFRPAPHGAFHCDIVCHVMT
GLILKGAGEAQEAHPAFDQAAERIEKQLRRYLRRLKDRSAQAAAAEANRANGFSVEELDG
AGYTIFASPADEEEPAEAPLIVAETKVDIPEASVSDAVMMLDLRNTNALLFVNAGTAAYN
MVYRRQDGTIGWVEPRLA

NBRC No.	clone name	start	stop	length(bp)
G18-001-001	SP1FE13L00045B07	799	36,680	35,882
G18-001-155	SP1FE13L00045F09	3,499,710	18,843	33,956

We have been distributing copies of the microbial genomic DNA clones constructed during the course of each of the genomic DNA sequencing projects.
You can find more detailed information at http://www.nbrc.nite.go.jp/e/mdna-e.html.