CDS Information : SJA_C1-00120

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Sphingobium japonicum UT26S (= NBRC 101211) chromosome1	Legend Jump
Overview  Genome Clone

Center position		change
ID		change
Gene name		change

Organism	Sphingobium japonicum UT26S (= NBRC 101211)
Replicon	chromosome1
Start / Stop / Direction	7,836 / 7,273 / -
Location	complement(7273..7836)
Type	CDS
Length	564 bp (187 aa)

Product	thiamine monophosphate synthase
Gene name
Functional category	Intermedialy metabolism - metabolism of coenzymes
EC number	2.5.1.3
Note
KEGG pathway
Sequence feature
References

BLASTP Database:UniProtKB:8.8 show BLAST table	1 E=2e-65 Q1ND52_9SPHN Thiamine monophosphate synthase Alignment 2 E=8e-32 Q5NML1_ZYMMO Thiamine monophosphate synthase Alignment 3 E=9e-29 Q2GB91_NOVAD Thiamine monophosphate synthase Alignment 4 E=2e-28 Q1GNP4_SPHAL Thiamine monophosphate synthase Alignment 5 E=3e-28 Q2N781_9SPHN Thiamine monophosphate synthase by acc
HAMAP	No significant hit
InterPro Database:interpro:16.0	IPR003733 Thiamine monophosphate synthase (Domain) SSF51391   Thiamin phosphate synthase PD149806   Q82ST9_NITEU_Q82ST9; PF02581   TMP-TENI IPR003733 Thiamine monophosphate synthase (Family) PF02581   TMP-TENI IPR013785 Aldolase-type TIM barrel (Domain) G3DSA:3.20.20.70   no description
SignalP	No significant hit
TMHMM	No significant hit
SOSUI	No significant hit

size of protein	187 amino acids
molecular mass	20,651.16 Da
pI	12.45
aa composition	Ala Val Leu Ile Phe Trp Pro Met Gly Ser 17.1 (32aa) 5.3 (10aa) 10.7 (20aa) 2.7 (5aa) 3.2 (6aa) 2.1 (4aa) 4.3 (8aa) 4.8 (9aa) 10.2 (19aa) 3.7 (7aa) Thr Cys Asn Gln Tyr Lys His Arg Asp Glu 3.2 (6aa) 0 (0aa) 0 (0aa) 1.6 (3aa) 0.5 (1aa) 2.7 (5aa) 4.3 (8aa) 16 (30aa) 4.8 (9aa) 2.7 (5aa)

>SJA_C1-00120 thiamine monophosphate synthase
ATGGCCATGCAACGCCGCCACCGCAAAAAACTGCCGACGATCTGGTTGATGACCGACGAA
CGCGTCGGGGAGTCCGCCTTGCTGGCGGCTATCGATCGCCTGCCGAAGGGCAGGGCGGGG
GTCATATTCCGGCACTATCGCACGGCGGCGGCGGAACGCCGCGCCTTGTTCGATCGGGTC
GCCAGGATGGCCCGAAGGCGGCGGCTGGTGCTGATGCTGGGCGGCACGGCGGCGCAGGCG
CGGGCCTGGCGCGCCGATGGCTGGCATGGCCGCGACCGGCGGAGGGACGGAAAGACGCTG
CTCCACAGCAGGCCCGTGCATGACAAGCGGCAGATGGCGGAAGCCGCCCGCGCTGGCGCG
GATTTCGTCTTCCTCTCGCCGCTTTTCCCGACGCGCTCGCATCCCGGTTCGCTTGTGTTG
GGGCGGGCGGGATTCGCGGCCCTGGCGCGGCTGGCCCCCATGCCGGTGATCGCCCTGGGC
GGAGTGCGCGCGGCGCATCGGCATATGCTGGCGGGCATGGGCGCCTCCGGCTGGGGCGCG
ATCGACGGCCTGTCGGTTGAGTAG


>SJA_C1-00120 thiamine monophosphate synthase
MAMQRRHRKKLPTIWLMTDERVGESALLAAIDRLPKGRAGVIFRHYRTAAAERRALFDRV
ARMARRRRLVLMLGGTAAQARAWRADGWHGRDRRRDGKTLLHSRPVHDKRQMAEAARAGA
DFVFLSPLFPTRSHPGSLVLGRAGFAALARLAPMPVIALGGVRAAHRHMLAGMGASGWGA
IDGLSVE

NBRC No.	clone name	start	stop	length(bp)
G18-001-001	SP1FE13L00045B07	799	36,680	35,882
G18-001-155	SP1FE13L00045F09	3,499,710	18,843	33,956

We have been distributing copies of the microbial genomic DNA clones constructed during the course of each of the genomic DNA sequencing projects.
You can find more detailed information at http://www.nbrc.nite.go.jp/e/mdna-e.html.